/*
* BeautiTester.java
*
* Copyright (C) 2002-2006 Alexei Drummond and Andrew Rambaut
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package test.dr.app.beauti;
import dr.app.beauti.options.BeautiOptions;
/**
* @author Andrew Rambaut
* @author Alexei Drummond
* @version $Id: BeautiTester.java,v 1.2 2005/07/11 14:07:25 rambaut Exp $
*/
public class BeautiTester {
public BeautiTester() {
BeautiTesterConfig btc = new BeautiTesterConfig();
btc.createScriptWriter("tests/run_script.sh");
BeautiOptions beautiOptions = btc.createOptions();
btc.importFromFile("examples/Primates.nex", beautiOptions, false);
btc.buildNucModels("tests/pri_", beautiOptions);
beautiOptions = btc.createOptions();
btc.importFromFile("examples/Primates.nex", beautiOptions, true);
btc.buildAAModels("tests/pri_", beautiOptions);
beautiOptions = btc.createOptions();
btc.importFromFile("examples/Dengue4.env.nex", beautiOptions, false);
// beautiOptions.fixedSubstitutionRate = false;
btc.buildNucModels("tests/den_", beautiOptions);
beautiOptions = btc.createOptions();
btc.importFromFile("examples/Dengue4.env.nex", beautiOptions, true);
// beautiOptions.fixedSubstitutionRate = false;
btc.buildAAModels("tests/den_", beautiOptions);
btc.closeScriptWriter();
}
//Main method
public static void main(String[] args) {
new BeautiTester();
}
}