/* * SetOperatorParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.operators; import dr.inference.model.Parameter; import dr.inference.operators.MCMCOperator; import dr.inference.operators.SetOperator; import dr.xml.*; /** */ public class SetOperatorParser extends AbstractXMLObjectParser { public static final String SET_OPERATOR = "setOperator"; public static final String SET = "set"; public String getParserName() { return SET_OPERATOR; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { double[] values = xo.getDoubleArrayAttribute(SET); double weight = xo.getDoubleAttribute(MCMCOperator.WEIGHT); Parameter parameter = (Parameter) xo.getChild(Parameter.class); System.out.println("Creating set operator for parameter " + parameter.getParameterName()); System.out.print(" set = {" + values[0]); for (int i = 1; i < values.length; i++) { System.out.print(", " + values[i]); } System.out.println("}"); SetOperator operator = new SetOperator(parameter, values); operator.setWeight(weight); return operator; } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element represents an operator on a set."; } public Class getReturnType() { return SetOperator.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ AttributeRule.newDoubleArrayRule(SET), AttributeRule.newDoubleRule(MCMCOperator.WEIGHT), new ElementRule(Parameter.class) }; }