/*
* TransformedParameterParser.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inferencexml.model;
import dr.inference.model.Parameter;
import dr.inference.model.TransformedParameter;
import dr.util.Transform;
import dr.xml.*;
/**
* @author Marc A. Suchard
*/
public class TransformedParameterParser extends AbstractXMLObjectParser {
public static final String TRANSFORMED_PARAMETER = "transformedParameter";
public static final String INVERSE = "inverse";
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
final Parameter parameter = (Parameter) xo.getChild(Parameter.class);
final Transform.ParsedTransform parsedTransform = (Transform.ParsedTransform) xo.getChild(Transform.ParsedTransform.class);
final boolean inverse = xo.getAttribute(INVERSE, false);
TransformedParameter transformedParameter = new TransformedParameter(parameter, parsedTransform.transform, inverse);
return transformedParameter;
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
new ElementRule(Parameter.class),
new ElementRule(Transform.ParsedTransform.class),
AttributeRule.newBooleanRule(INVERSE, true),
};
public String getParserDescription() {
return "A transformed parameter.";
}
public Class getReturnType() {
return TransformedParameter.class;
}
public String getParserName() {
return TRANSFORMED_PARAMETER;
}
}