/* * TransformedParameterParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.model; import dr.inference.model.Parameter; import dr.inference.model.TransformedParameter; import dr.util.Transform; import dr.xml.*; /** * @author Marc A. Suchard */ public class TransformedParameterParser extends AbstractXMLObjectParser { public static final String TRANSFORMED_PARAMETER = "transformedParameter"; public static final String INVERSE = "inverse"; public Object parseXMLObject(XMLObject xo) throws XMLParseException { final Parameter parameter = (Parameter) xo.getChild(Parameter.class); final Transform.ParsedTransform parsedTransform = (Transform.ParsedTransform) xo.getChild(Transform.ParsedTransform.class); final boolean inverse = xo.getAttribute(INVERSE, false); TransformedParameter transformedParameter = new TransformedParameter(parameter, parsedTransform.transform, inverse); return transformedParameter; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(Parameter.class), new ElementRule(Transform.ParsedTransform.class), AttributeRule.newBooleanRule(INVERSE, true), }; public String getParserDescription() { return "A transformed parameter."; } public Class getReturnType() { return TransformedParameter.class; } public String getParserName() { return TRANSFORMED_PARAMETER; } }