/*
* DynamicalForce.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.epidemiology;
import java.util.ArrayList;
import java.util.List;
/**
* @author Trevor Bedford
*/
public class DynamicalForce {
private String name = "force";
private double coefficient = 0.0;
private List<DynamicalVariable> multipliers = new ArrayList<DynamicalVariable>();
private List<DynamicalVariable> divisors = new ArrayList<DynamicalVariable>();
private DynamicalVariable increasingVariable;
private DynamicalVariable decreasingVariable;
private double storedCoefficient = 0.0;
public DynamicalForce(String n, double c, DynamicalVariable increasing, DynamicalVariable decreasing) {
name = n;
coefficient = c;
increasingVariable = increasing;
decreasingVariable = decreasing;
}
public String getName() {
return name;
}
public void addMultiplier(DynamicalVariable var) {
multipliers.add(var);
}
public void addDivisor(DynamicalVariable var) {
divisors.add(var);
}
// reset
public void reset(double c) {
coefficient = c;
}
public void store() {
storedCoefficient = coefficient;
}
public void restore() {
coefficient = storedCoefficient;
}
public double getForce(double t) {
double force = coefficient;
for (DynamicalVariable var : multipliers) {
force *= var.getValue(t);
}
for (DynamicalVariable var : divisors) {
force /= var.getValue(t);
}
if (increasingVariable.getValue(t) < 0 || decreasingVariable.getValue(t) < 0) {
force = 0.0;
}
return force;
}
public void modCurrentValue(double t, double dt) {
double dv = getForce(t) * dt;
increasingVariable.modCurrentValue(dv);
decreasingVariable.modCurrentValue(-dv);
}
}