/* * DynamicalForce.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodel.epidemiology; import java.util.ArrayList; import java.util.List; /** * @author Trevor Bedford */ public class DynamicalForce { private String name = "force"; private double coefficient = 0.0; private List<DynamicalVariable> multipliers = new ArrayList<DynamicalVariable>(); private List<DynamicalVariable> divisors = new ArrayList<DynamicalVariable>(); private DynamicalVariable increasingVariable; private DynamicalVariable decreasingVariable; private double storedCoefficient = 0.0; public DynamicalForce(String n, double c, DynamicalVariable increasing, DynamicalVariable decreasing) { name = n; coefficient = c; increasingVariable = increasing; decreasingVariable = decreasing; } public String getName() { return name; } public void addMultiplier(DynamicalVariable var) { multipliers.add(var); } public void addDivisor(DynamicalVariable var) { divisors.add(var); } // reset public void reset(double c) { coefficient = c; } public void store() { storedCoefficient = coefficient; } public void restore() { coefficient = storedCoefficient; } public double getForce(double t) { double force = coefficient; for (DynamicalVariable var : multipliers) { force *= var.getValue(t); } for (DynamicalVariable var : divisors) { force /= var.getValue(t); } if (increasingVariable.getValue(t) < 0 || decreasingVariable.getValue(t) < 0) { force = 0.0; } return force; } public void modCurrentValue(double t, double dt) { double dv = getForce(t) * dt; increasingVariable.modCurrentValue(dv); decreasingVariable.modCurrentValue(-dv); } }