/* * SwapOperatorParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.operators; import dr.inference.model.Parameter; import dr.inference.operators.SwapOperator; import dr.xml.*; /** */ public class SwapOperatorParser extends AbstractXMLObjectParser { public final static String SWAP_OPERATOR = "swapOperator"; public String getParserName() { return SWAP_OPERATOR; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { Parameter parameter = (Parameter) xo.getChild(Parameter.class); double weight = xo.getDoubleAttribute("weight"); int size = xo.getIntegerAttribute("size"); boolean autoOptimize = xo.getBooleanAttribute("autoOptimize"); if (autoOptimize) throw new XMLParseException("swapOperator can't be optimized!"); System.out.println("Creating swap operator for parameter " + parameter.getParameterName() + " (weight=" + weight + ")"); SwapOperator so = new SwapOperator(parameter, size); so.setWeight(weight); return so; } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element represents an operator that swaps values in a multi-dimensional parameter."; } public Class getReturnType() { return SwapOperator.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ AttributeRule.newDoubleRule("weight"), AttributeRule.newIntegerRule("size"), AttributeRule.newBooleanRule("autoOptimize"), new ElementRule(Parameter.class) }; }