/* * PopulationSizeGraphParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml.coalescent; import dr.evomodel.coalescent.PopulationSizeGraph; import dr.evomodel.coalescent.VariableDemographicModel; import dr.xml.*; /** */ public class PopulationSizeGraphParser extends AbstractXMLObjectParser { public static String POPGRAPH_STATISTIC = "popGraph"; public String getParserName() { return POPGRAPH_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { Object child = xo.getChild(0); if (child instanceof VariableDemographicModel) { final double dim = xo.getDoubleAttribute("time"); return new PopulationSizeGraph((VariableDemographicModel) child, dim); } throw new XMLParseException("Unknown element found in " + getParserName() + " element:" + child); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a statistic that is the population size at evenly spaced intervals over tree."; } public Class getReturnType() { return PopulationSizeGraph.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ new ElementRule(VariableDemographicModel.class, 1, 1), AttributeRule.newDoubleRule("time") }; }