/* * AlloppNumHybsStatisticParser.java * * Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodel.alloppnet.parsers; import dr.evomodel.alloppnet.speciation.AlloppNumHybsStatistic; import dr.evomodel.alloppnet.speciation.AlloppSpeciesNetworkModel; import dr.xml.*; /** * @author Graham Jones * Date: 08/10/2012 */ public class AlloppNumHybsStatisticParser extends AbstractXMLObjectParser { public static final String NUMHYBS_STATISTIC = "alloppNumHybsStatistic"; public static final String APSPNETWORK = "apspNetwork"; public String getParserName() { return NUMHYBS_STATISTIC; } @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { final XMLObject asnmxo = xo.getChild(APSPNETWORK); AlloppSpeciesNetworkModel aspnet = (AlloppSpeciesNetworkModel) asnmxo.getChild(AlloppSpeciesNetworkModel.class); return new AlloppNumHybsStatistic(aspnet); } private XMLSyntaxRule[] asnmRules() { return new XMLSyntaxRule[]{ new ElementRule(AlloppSpeciesNetworkModel.class) }; } @Override public XMLSyntaxRule[] getSyntaxRules() { return new XMLSyntaxRule[]{ new ElementRule(APSPNETWORK, asnmRules()), }; } @Override public String getParserDescription() { return "Statistic for number of hybridizations in allopolyploid network"; } @Override public Class getReturnType() { return AlloppNumHybsStatistic.class; } }