/* * UniformDistributionModelParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.distribution; import dr.inference.distribution.UniformDistributionModel; import dr.inference.model.Parameter; import dr.xml.*; /** * Reads a normal distribution model from a DOM Document element. */ public class UniformDistributionModelParser extends AbstractXMLObjectParser { public static final String UNIFORM_DISTRIBUTION_MODEL = "uniformDistributionModel"; public static final String LOWER = "lower"; public static final String UPPER = "upper"; public String getParserName() { return UNIFORM_DISTRIBUTION_MODEL; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { Parameter upperParam; Parameter lowerParam; XMLObject cxo = xo.getChild(LOWER); if (cxo.getChild(0) instanceof Parameter) { lowerParam = (Parameter) cxo.getChild(Parameter.class); } else { lowerParam = new Parameter.Default(cxo.getDoubleChild(0)); } cxo = xo.getChild(UPPER); if (cxo.getChild(0) instanceof Parameter) { upperParam = (Parameter) cxo.getChild(Parameter.class); } else { upperParam = new Parameter.Default(cxo.getDoubleChild(0)); } return new UniformDistributionModel(lowerParam, upperParam); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(LOWER, new XMLSyntaxRule[]{ new XORRule( new ElementRule(Parameter.class), new ElementRule(Double.class) )} ), new ElementRule(UPPER, new XMLSyntaxRule[]{ new XORRule( new ElementRule(Parameter.class), new ElementRule(Double.class) )} ) }; public String getParserDescription() { return "Describes a uniform distribution with a given lower and upper bounds "; } public Class getReturnType() { return UniformDistributionModel.class; } }