/*
* BranchDirectionAttributeProvider.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.continuous;
import dr.xml.*;
/*
* @author Marc Suchard
*/
public class BranchDirectionAttributeProvider extends BivariateTraitBranchAttributeProvider {
public static final String DIRECTION_PROVIDER = "branchDirections";
public static String TRAIT_EXTENSION = ".angle";
public BranchDirectionAttributeProvider(SampledMultivariateTraitLikelihood traitLikelihood) {
super(traitLikelihood);
}
protected String extensionName() {
return TRAIT_EXTENSION;
}
protected double convert(double latValue, double longValue, double timeValue) {
double angle = Math.atan2(latValue,longValue);
if (angle < 0)
angle = 2*Math.PI + angle;
return angle;
}
public static XMLObjectParser PARSER = new AbstractXMLObjectParser() {
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
SampledMultivariateTraitLikelihood traitLikelihood = (SampledMultivariateTraitLikelihood)
xo.getChild(SampledMultivariateTraitLikelihood.class);
return new BranchDirectionAttributeProvider(traitLikelihood);
}
public XMLSyntaxRule[] getSyntaxRules() {
return new XMLSyntaxRule[] {
new ElementRule(SampledMultivariateTraitLikelihood.class),
};
}
public String getParserDescription() {
return null;
}
public Class getReturnType() {
return BivariateTraitBranchAttributeProvider.class;
}
public String getParserName() {
return DIRECTION_PROVIDER;
}
};
// public static void main(String[] arg) {
// double[] vector = {-10,1};
//
// double angle = convert(vector[0],vector[1]);
//
// System.err.println("vec: "+new Vector(vector));
// System.err.println("angle: "+angle);
// }
}