/*
* GMRFIntervalHeightsStatisticParser.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodelxml.coalescent;
import dr.evomodel.coalescent.GMRFIntervalHeightsStatistic;
import dr.evomodel.coalescent.GMRFSkyrideLikelihood;
import dr.inference.model.Statistic;
import dr.xml.*;
/**
*/
public class GMRFIntervalHeightsStatisticParser extends AbstractXMLObjectParser {
public static final String GMRF_HEIGHTS_STATISTIC = "gmrfHeightsStatistic";
public String getParserName() {
return GMRF_HEIGHTS_STATISTIC;
}
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
String name = xo.getAttribute(Statistic.NAME, xo.getId());
GMRFSkyrideLikelihood skyrideLikelihood = (GMRFSkyrideLikelihood) xo.getChild(GMRFSkyrideLikelihood.class);
return new GMRFIntervalHeightsStatistic(name, skyrideLikelihood);
}
//************************************************************************
// AbstractXMLObjectParser implementation
//************************************************************************
public String getParserDescription() {
return "A statistic that returns the heights of each internal node in increasing order (or groups them by a group size parameter)";
}
public Class getReturnType() {
return GMRFIntervalHeightsStatistic.class;
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
AttributeRule.newStringRule(Statistic.NAME, true),
new ElementRule(GMRFSkyrideLikelihood.class),
};
}