/* * SubStatisticParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.model; import dr.inference.model.Statistic; import dr.inference.model.SubStatistic; import dr.xml.*; /** */ public class SubStatisticParser extends AbstractXMLObjectParser { public static final String SUB_STATISTIC = "subStatistic"; public static final String DIMENSION = "dimension"; public String getParserName() { return SUB_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { String name; if (xo.hasAttribute(Statistic.NAME) || xo.hasAttribute(dr.xml.XMLParser.ID)) name = xo.getAttribute(Statistic.NAME, xo.getId()); else name = ""; final Statistic stat = (Statistic) xo.getChild(Statistic.class); final int[] values = xo.getIntegerArrayAttribute(DIMENSION); if (values.length == 0) { throw new XMLParseException("Must specify at least one dimension"); } final int dim = stat.getDimension(); for (int value : values) { if (value >= dim || value < 0) { throw new XMLParseException("Dimension " + value + " is not a valid dimension."); } } return new SubStatistic(name, values, stat); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "Allows you to choose specific dimensions of a given statistic"; } public Class getReturnType() { return SubStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return new XMLSyntaxRule[]{ AttributeRule.newIntegerArrayRule(DIMENSION, false), new ElementRule(Statistic.class), }; } }