/* * DirichletProcessPriorLoggerParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodel.branchmodel.lineagespecific; import dr.inference.model.CompoundParameter; import dr.inference.model.Parameter; import dr.xml.AbstractXMLObjectParser; import dr.xml.XMLObject; import dr.xml.XMLParseException; import dr.xml.XMLSyntaxRule; public class DirichletProcessPriorLoggerParser extends AbstractXMLObjectParser { public static final String DPP_LOGGER = "dppLogger"; public static final String PRECISION = "precision"; @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { // ParametricMultivariateDistributionModel baseModel = (ParametricMultivariateDistributionModel) xo.getChild(ParametricMultivariateDistributionModel.class); Parameter precisionParameter = (Parameter)xo.getElementFirstChild(PRECISION); CompoundParameter uniquelyRealizedParameters = (CompoundParameter)xo.getChild(CompoundParameter.class); Parameter categoriesParameter = (Parameter)xo.getElementFirstChild(DirichletProcessPriorParser.CATEGORIES); return new DirichletProcessPriorLogger(precisionParameter, categoriesParameter, uniquelyRealizedParameters); }// END: parseXMLObject @Override public XMLSyntaxRule[] getSyntaxRules() { // TODO Auto-generated method stub return null; } @Override public String getParserName() { return DPP_LOGGER; } @Override public String getParserDescription() { return DPP_LOGGER; } @Override public Class getReturnType() { return DirichletProcessPriorLogger.class; } }// END: class