/*
* TreeNodeFilter.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evolution.tree;
import dr.evolution.util.TaxonList;
import dr.evomodel.branchratemodel.LocalClockModel;
import dr.evomodel.tree.TreeModel;
import dr.inference.model.AbstractModel;
import dr.inference.model.Model;
import dr.inference.model.Variable;
import java.util.BitSet;
import java.util.HashSet;
import java.util.Set;
/**
* @author Marc A. Suchard
*/
public interface TreeNodeFilter {
boolean includeNode(Tree tree, NodeRef node);
public class ExternalInternalNodeFilter implements TreeNodeFilter {
public ExternalInternalNodeFilter(boolean includeExternalNodes, boolean includeInternalNodes) {
this.includeExternalNodes = includeExternalNodes;
this.includeInternalNodes = includeInternalNodes;
}
public boolean includeNode(Tree tree, NodeRef node) {
return ((includeExternalNodes && tree.isExternal(node))
|| (includeInternalNodes && !tree.isExternal(node)));
}
private final boolean includeExternalNodes;
private final boolean includeInternalNodes;
}
}