/* * DifferenceMatrixParameterParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.model; /** * Created by max on 4/23/15. */ import dr.inference.model.DifferenceMatrixParameter; import dr.inference.model.MatrixParameter; import dr.inference.model.Parameter; import dr.xml.AbstractXMLObjectParser; import dr.xml.XMLObject; import dr.xml.XMLParseException; import dr.xml.XMLSyntaxRule; public class DifferenceMatrixParameterParser extends AbstractXMLObjectParser { public static final String DIFFERENCE_MATRIX_PARAMETER = "differenceMatrixParameter"; public static final String PARAMETER1 = "parameter1"; public static final String PARAMETER2 = "parameter2"; @Override public String getParserName() { return DIFFERENCE_MATRIX_PARAMETER; } @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { Parameter parameter1 = (Parameter) xo.getElementFirstChild(PARAMETER1); Parameter parameter2 = (Parameter) xo.getElementFirstChild(PARAMETER2); // if(parameter1.getDimension() != parameter2.getDimension()){ // throw new XMLParseException("Parameters in ratio '" + xo.getId() + "' must have the same dimension"); // } return new DifferenceMatrixParameter(parameter1, parameter2); }//END: parseXMLObject @Override public XMLSyntaxRule[] getSyntaxRules() { //TODO return null; } @Override public String getParserDescription() { return DIFFERENCE_MATRIX_PARAMETER; } @Override public Class getReturnType() { return Parameter.class; } }//END: class