TraceCustomized.java

/*
 * TraceCustomized.java
 *
 * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
 *
 * This file is part of BEAST.
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership and licensing.
 *
 * BEAST is free software; you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 *  BEAST is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with BEAST; if not, write to the
 * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 * Boston, MA  02110-1301  USA
 */

package dr.inference.trace;

/**
 * Make a new trace calculated from an existing trace in log
 *
 * @author Walter Xie
 */
public class TraceCustomized extends Trace{

    public TraceCustomized(String name) { // traceType = TraceFactory.TraceType.DOUBLE;
        super(name);
    }

    public void addValues(Trace<Double> t) {
        Double r = 1.0;
        for (Double v : t.values) {
            Double newV = 2.0 / (1.0 + v * r);
            super.values.add(newV);
        }
    }
}