/* * ComplementParameter.java * * Copyright (c) 2002-2016 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inference.model; /** * @author Marc Suchard */ public class ComplementParameter extends Parameter.Abstract implements VariableListener { public ComplementParameter(Parameter parameter) { this.parameter = parameter; parameter.addVariableListener(this); } public int getDimension() { return parameter.getDimension(); } protected void storeValues() { parameter.storeParameterValues(); } protected void restoreValues() { parameter.restoreParameterValues(); } protected void acceptValues() { parameter.acceptParameterValues(); } protected void adoptValues(Parameter source) { throw new RuntimeException("Not implemented"); } public double getParameterValue(int dim) { return 1.0 - parameter.getParameterValue(dim); } public void setParameterValue(int dim, double value) { throw new RuntimeException("Not implemented"); } public void setParameterValueQuietly(int dim, double value) { throw new RuntimeException("Not implemented"); } public void setParameterValueNotifyChangedAll(int dim, double value) { throw new RuntimeException("Not implemented"); } public String getParameterName() { if (getId() == null) { StringBuilder sb = new StringBuilder("complement"); sb.append(".").append(parameter.getId()); setId(sb.toString()); } return getId(); } public void addBounds(Bounds bounds) { this.bounds = bounds; } public Bounds<Double> getBounds() { if (bounds == null) { return parameter.getBounds(); // TODO } else { return bounds; } } public void addDimension(int index, double value) { throw new RuntimeException("Not yet implemented."); } public double removeDimension(int index) { throw new RuntimeException("Not yet implemented."); } public void variableChangedEvent(Variable variable, int index, ChangeType type) { fireParameterChangedEvent(index, type); } private final Parameter parameter; private Bounds bounds = null; }