/*
* ComplementParameter.java
*
* Copyright (c) 2002-2016 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inference.model;
/**
* @author Marc Suchard
*/
public class ComplementParameter extends Parameter.Abstract implements VariableListener {
public ComplementParameter(Parameter parameter) {
this.parameter = parameter;
parameter.addVariableListener(this);
}
public int getDimension() {
return parameter.getDimension();
}
protected void storeValues() {
parameter.storeParameterValues();
}
protected void restoreValues() {
parameter.restoreParameterValues();
}
protected void acceptValues() {
parameter.acceptParameterValues();
}
protected void adoptValues(Parameter source) {
throw new RuntimeException("Not implemented");
}
public double getParameterValue(int dim) {
return 1.0 - parameter.getParameterValue(dim);
}
public void setParameterValue(int dim, double value) {
throw new RuntimeException("Not implemented");
}
public void setParameterValueQuietly(int dim, double value) {
throw new RuntimeException("Not implemented");
}
public void setParameterValueNotifyChangedAll(int dim, double value) {
throw new RuntimeException("Not implemented");
}
public String getParameterName() {
if (getId() == null) {
StringBuilder sb = new StringBuilder("complement");
sb.append(".").append(parameter.getId());
setId(sb.toString());
}
return getId();
}
public void addBounds(Bounds bounds) {
this.bounds = bounds;
}
public Bounds<Double> getBounds() {
if (bounds == null) {
return parameter.getBounds(); // TODO
} else {
return bounds;
}
}
public void addDimension(int index, double value) {
throw new RuntimeException("Not yet implemented.");
}
public double removeDimension(int index) {
throw new RuntimeException("Not yet implemented.");
}
public void variableChangedEvent(Variable variable, int index, ChangeType type) {
fireParameterChangedEvent(index, type);
}
private final Parameter parameter;
private Bounds bounds = null;
}