/*
* NoUTurnOperator.java
*
* Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inference.operators.hmc;
import dr.inference.hmc.GradientWrtParameterProvider;
import dr.inference.model.Likelihood;
import dr.inference.model.Parameter;
import dr.inference.operators.CoercionMode;
import dr.inference.operators.GeneralOperator;
/**
* @author Marc A. Suchard
*/
public class NoUTurnOperator extends HamiltonianMonteCarloOperator implements GeneralOperator {
public NoUTurnOperator(CoercionMode mode, double weight, GradientWrtParameterProvider gradientProvider,
Parameter parameter, double stepSize, int nSteps, double drawVariance) {
super(mode, weight, gradientProvider, parameter, null, stepSize, nSteps, drawVariance);
}
@Override
public double doOperation(Likelihood likelihood) {
return leafFrog(); // TODO Implement NUTS algorithm
}
@Override
public double doOperation() {
throw new IllegalStateException("Should not be called.");
}
private void buildTree() {
}
private double findReasonableEpsilon() {
return 0.0;
}
private double computeStopCriterion() {
return 0.0;
}
}