/* * NoUTurnOperator.java * * Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inference.operators.hmc; import dr.inference.hmc.GradientWrtParameterProvider; import dr.inference.model.Likelihood; import dr.inference.model.Parameter; import dr.inference.operators.CoercionMode; import dr.inference.operators.GeneralOperator; /** * @author Marc A. Suchard */ public class NoUTurnOperator extends HamiltonianMonteCarloOperator implements GeneralOperator { public NoUTurnOperator(CoercionMode mode, double weight, GradientWrtParameterProvider gradientProvider, Parameter parameter, double stepSize, int nSteps, double drawVariance) { super(mode, weight, gradientProvider, parameter, null, stepSize, nSteps, drawVariance); } @Override public double doOperation(Likelihood likelihood) { return leafFrog(); // TODO Implement NUTS algorithm } @Override public double doOperation() { throw new IllegalStateException("Should not be called."); } private void buildTree() { } private double findReasonableEpsilon() { return 0.0; } private double computeStopCriterion() { return 0.0; } }