/* * InvariantOperatorParser.java * * Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.operators; import dr.inference.model.Likelihood; import dr.inference.model.Parameter; import dr.inference.operators.DirtyLikelihoodOperator; import dr.inference.operators.InvariantOperator; import dr.inference.operators.MCMCOperator; import dr.xml.*; import static dr.inference.operators.InvariantOperator.*; /** * */ public class InvariantOperatorParser extends AbstractXMLObjectParser { public static final String OPERATOR_NAME = "invariantOperator"; public String getParserName() { return OPERATOR_NAME; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { double weight = xo.getDoubleAttribute(MCMCOperator.WEIGHT); Parameter parameter = (Parameter) xo.getChild(Parameter.class); Likelihood likelihood = (Likelihood) xo.getChild(Likelihood.class); return new InvariantOperator.Rotation(parameter, weight, likelihood); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a operator that forces the entire model likelihood recomputation"; } public Class getReturnType() { return InvariantOperator.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { AttributeRule.newDoubleRule(MCMCOperator.WEIGHT), new ElementRule(Parameter.class), new ElementRule(Likelihood.class, true), }; }