/*
* ThresholdStatisticParser.java
*
* Copyright (c) 2002-2016 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inferencexml.model;
import dr.inference.model.Statistic;
import dr.inference.model.SumStatistic;
import dr.inference.model.ThresholdStatistic;
import dr.xml.*;
/**
*/
public class ThresholdStatisticParser extends AbstractXMLObjectParser {
public static final String THRESHOLD_STATISTIC = "thresholdStatistic";
public static String THRESHOLD = "threshold";
public String getParserName() {
return THRESHOLD_STATISTIC;
}
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
double threshold = xo.getAttribute(THRESHOLD, 0.0);
String name = THRESHOLD_STATISTIC;
if (xo.hasAttribute(Statistic.NAME)) {
name = xo.getAttribute(Statistic.NAME, xo.getId());
} else if (xo.hasAttribute(XMLParser.ID)) {
name = xo.getAttribute(XMLParser.ID, xo.getId());
}
final Statistic statistic = (Statistic) xo.getChild(Statistic.class);
final ThresholdStatistic thresholdStatistic = new ThresholdStatistic(name, statistic, threshold);
return thresholdStatistic;
}
//************************************************************************
// AbstractXMLObjectParser implementation
//************************************************************************
public String getParserDescription() {
return "This element returns a statistic that thresholds the child statistics.";
}
public Class getReturnType() {
return ThresholdStatistic.class;
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
AttributeRule.newStringRule(Statistic.NAME, true),
new ElementRule(Statistic.class),
AttributeRule.newDoubleRule(THRESHOLD, true),
};
}