/* * ThresholdStatisticParser.java * * Copyright (c) 2002-2016 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.model; import dr.inference.model.Statistic; import dr.inference.model.SumStatistic; import dr.inference.model.ThresholdStatistic; import dr.xml.*; /** */ public class ThresholdStatisticParser extends AbstractXMLObjectParser { public static final String THRESHOLD_STATISTIC = "thresholdStatistic"; public static String THRESHOLD = "threshold"; public String getParserName() { return THRESHOLD_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { double threshold = xo.getAttribute(THRESHOLD, 0.0); String name = THRESHOLD_STATISTIC; if (xo.hasAttribute(Statistic.NAME)) { name = xo.getAttribute(Statistic.NAME, xo.getId()); } else if (xo.hasAttribute(XMLParser.ID)) { name = xo.getAttribute(XMLParser.ID, xo.getId()); } final Statistic statistic = (Statistic) xo.getChild(Statistic.class); final ThresholdStatistic thresholdStatistic = new ThresholdStatistic(name, statistic, threshold); return thresholdStatistic; } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a statistic that thresholds the child statistics."; } public Class getReturnType() { return ThresholdStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { AttributeRule.newStringRule(Statistic.NAME, true), new ElementRule(Statistic.class), AttributeRule.newDoubleRule(THRESHOLD, true), }; }