/* * DefaultBranchRateModel.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodel.branchratemodel; import dr.evolution.tree.*; import dr.inference.model.Model; import dr.inference.model.ModelListener; import dr.inference.model.Variable; /** * @author Andrew Rambaut * @version $Id: DefaultBranchRateModel.java,v 1.4 2005/05/24 20:25:57 rambaut Exp $ */ public final class DefaultBranchRateModel implements BranchRateModel { public double getBranchRate(Tree tree, NodeRef node) { return 1.0; } public void addModelListener(ModelListener listener) { // nothing to do } public void removeModelListener(ModelListener listener) { // nothing to do } public void storeModelState() { // nothing to do } public void restoreModelState() { // nothing to do } public void acceptModelState() { // nothing to do } public boolean isValidState() { return true; } public int getModelCount() { return 0; } public Model getModel(int i) { return null; } public int getVariableCount() { return 0; } public Variable getVariable(int i) { return null; } public String getModelName() { return null; } public String getId() { return null; } public void setId(String id) { // nothing to do } public boolean isUsed() { return false; } public String getTraitName() { return RATE; } public Intent getIntent() { return Intent.BRANCH; } public boolean getLoggable() { return true; } public TreeTrait getTreeTrait(final String key) { return this; } public TreeTrait[] getTreeTraits() { return new TreeTrait[] { this }; } public Class getTraitClass() { return Double.class; } public int getDimension() { return 1; } public Double getTrait(final Tree tree, final NodeRef node) { return getBranchRate(tree, node); } public String getTraitString(final Tree tree, final NodeRef node) { return Double.toString(getBranchRate(tree, node)); } }