/*
* DefaultBranchRateModel.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.branchratemodel;
import dr.evolution.tree.*;
import dr.inference.model.Model;
import dr.inference.model.ModelListener;
import dr.inference.model.Variable;
/**
* @author Andrew Rambaut
* @version $Id: DefaultBranchRateModel.java,v 1.4 2005/05/24 20:25:57 rambaut Exp $
*/
public final class DefaultBranchRateModel implements BranchRateModel {
public double getBranchRate(Tree tree, NodeRef node) {
return 1.0;
}
public void addModelListener(ModelListener listener) {
// nothing to do
}
public void removeModelListener(ModelListener listener) {
// nothing to do
}
public void storeModelState() {
// nothing to do
}
public void restoreModelState() {
// nothing to do
}
public void acceptModelState() {
// nothing to do
}
public boolean isValidState() {
return true;
}
public int getModelCount() {
return 0;
}
public Model getModel(int i) {
return null;
}
public int getVariableCount() {
return 0;
}
public Variable getVariable(int i) {
return null;
}
public String getModelName() {
return null;
}
public String getId() {
return null;
}
public void setId(String id) {
// nothing to do
}
public boolean isUsed() {
return false;
}
public String getTraitName() {
return RATE;
}
public Intent getIntent() {
return Intent.BRANCH;
}
public boolean getLoggable() {
return true;
}
public TreeTrait getTreeTrait(final String key) {
return this;
}
public TreeTrait[] getTreeTraits() {
return new TreeTrait[] { this };
}
public Class getTraitClass() {
return Double.class;
}
public int getDimension() {
return 1;
}
public Double getTrait(final Tree tree, final NodeRef node) {
return getBranchRate(tree, node);
}
public String getTraitString(final Tree tree, final NodeRef node) {
return Double.toString(getBranchRate(tree, node));
}
}