/*
* StrictClockBranchRates.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.branchratemodel;
import dr.evolution.tree.NodeRef;
import dr.evolution.tree.Tree;
import dr.evomodelxml.branchratemodel.StrictClockBranchRatesParser;
import dr.inference.model.Model;
import dr.inference.model.Parameter;
import dr.inference.model.Variable;
/**
* @author Alexei Drummond
* @author Andrew Rambaut
* @version $Id: StrictClockBranchRates.java,v 1.3 2006/01/09 17:44:30 rambaut Exp $
*/
public class StrictClockBranchRates extends AbstractBranchRateModel {
private final Parameter rateParameter;
public StrictClockBranchRates(Parameter rateParameter) {
super(StrictClockBranchRatesParser.STRICT_CLOCK_BRANCH_RATES);
this.rateParameter = rateParameter;
addVariable(rateParameter);
}
public void handleModelChangedEvent(Model model, Object object, int index) {
// nothing to do
}
protected final void handleVariableChangedEvent(Variable variable, int index, Parameter.ChangeType type) {
fireModelChanged();
}
protected void storeState() {
// nothing to do
}
protected void restoreState() {
// nothing to do
}
protected void acceptState() {
// nothing to do
}
public double getBranchRate(final Tree tree, final NodeRef node) {
return rateParameter.getParameterValue(0);
}
}