/* * DiscreteUniformDistribution.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.math.distributions; import dr.math.UnivariateFunction; /** * Created by mandevgill on 11/15/14. */ public class DiscreteUniformDistribution implements Distribution { public DiscreteUniformDistribution(double lower, double upper) { this.lower = lower; this.upper = upper; this.n = upper - lower + 1; } public double pdf(double x) { if (x < lower) { return 0; } else if (x > upper) { return 0; } else { return 1 / n; } } public double logPdf(double x) { /* if (x < 0) return Double.NEGATIVE_INFINITY; double r = -1 * (mean*mean) / (mean - stdev*stdev); double p = mean / (stdev*stdev); return Math.log(Math.pow(1-p,x)) + Math.log(Math.pow(p, r)) + GammaFunction.lnGamma(r + x) - GammaFunction.lnGamma(r) - GammaFunction.lnGamma(x+1); */ if (x < lower) { return Double.NEGATIVE_INFINITY; } else if (x > upper) { return Double.NEGATIVE_INFINITY; } else { return -Math.log(n); } } public double cdf(double x) { return (x - lower + 1) / n; } public double quantile(double y) { // fill in return Double.NaN; } public double mean() { return (lower + upper) / 2; } public double variance() { return (n * n - 1) / 12; } public UnivariateFunction getProbabilityDensityFunction() { throw new RuntimeException(); } double lower; double upper; double n; }