/* * SumDerivativeParser.java * * Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.hmc; import dr.inference.hmc.GradientWrtParameterProvider; import dr.inference.hmc.SumDerivative; import dr.xml.*; import java.util.ArrayList; import java.util.List; /** * @author Max Tolkoff * @author Marc A. Suchard */ public class SumDerivativeParser extends AbstractXMLObjectParser{ public final static String SUM_DERIVATIVE = "sumDerivative"; public final static String SUM_DERIVATIVE2 = "jointGradient"; @Override public String getParserName() { return SUM_DERIVATIVE; } @Override public String[] getParserNames() { return new String[] { SUM_DERIVATIVE, SUM_DERIVATIVE2 }; } @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { List<GradientWrtParameterProvider> derivativeList = new ArrayList<GradientWrtParameterProvider>(); for (int i = 0; i < xo.getChildCount(); i++) { GradientWrtParameterProvider grad = (GradientWrtParameterProvider) xo.getChild(i); derivativeList.add(grad); } return new SumDerivative(derivativeList); } @Override public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(GradientWrtParameterProvider.class, 1, Integer.MAX_VALUE), }; @Override public String getParserDescription() { return null; } @Override public Class getReturnType() { return SumDerivative.class; } }