/*
* RatioParameter.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.branchmodel.lineagespecific;
import java.util.List;
import dr.inference.model.Bounds;
import dr.inference.model.Parameter;
import dr.inference.model.Variable;
import dr.inference.model.VariableListener;
public class RatioParameter extends Parameter.Abstract implements
VariableListener {
private Parameter parameter1;
private Parameter parameter2;
private Bounds bounds = null;
public RatioParameter(Parameter parameter1, Parameter parameter2) {
this.parameter1 = parameter1;
this.parameter2 = parameter2;
this.parameter1.addVariableListener(this);
this.parameter2.addVariableListener(this);
}// END: Constructor
@Override
public double getParameterValue(int dim) {
double value = parameter1.getParameterValue(dim)
/ parameter2.getParameterValue(dim);
return value;
}// END: getParameterValue
@Override
public void setParameterValue(int dim, double value) {
throw new RuntimeException("Not implemented");
}
@Override
public void setParameterValueQuietly(int dim, double value) {
throw new RuntimeException("Not implemented");
}
@Override
public void setParameterValueNotifyChangedAll(int dim, double value) {
throw new RuntimeException("Not implemented");
}
@Override
public String getParameterName() {
if (getId() == null) {
StringBuilder sb = new StringBuilder("ratio");
sb.append(parameter1.getId()).append(".")
.append(parameter2.getId());
setId(sb.toString());
}
return getId();
}// END: getParameterName
@Override
public void addBounds(Bounds<Double> bounds) {
this.bounds = bounds;
}
@Override
public Bounds<Double> getBounds() {
return bounds;
}
@Override
public void addDimension(int index, double value) {
throw new RuntimeException("Not yet implemented.");
}
@Override
public double removeDimension(int index) {
throw new RuntimeException("Not yet implemented.");
}
@Override
public void variableChangedEvent(Variable variable, int index,
dr.inference.model.Variable.ChangeType type) {
fireParameterChangedEvent(index, type);
}
@Override
protected void storeValues() {
parameter1.storeParameterValues();
parameter2.storeParameterValues();
}
@Override
protected void restoreValues() {
parameter1.restoreParameterValues();
parameter2.restoreParameterValues();
}
@Override
protected void acceptValues() {
parameter1.acceptParameterValues();
parameter2.acceptParameterValues();
}
@Override
protected void adoptValues(Parameter source) {
throw new RuntimeException("Not implemented");
}
}// END: class