/* * #%L * OME Bio-Formats package for reading and converting biological file formats. * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ import loci.common.services.ServiceFactory; import loci.formats.*; import loci.formats.meta.IMetadata; import loci.formats.services.OMEXMLService; import ome.xml.model.enums.DimensionOrder; import ome.xml.model.enums.EnumerationException; import ome.xml.model.enums.PixelType; import ome.xml.model.primitives.PositiveInteger; /** * Demonstrates writing multiple RGB image planes to a movie. */ public class WriteRGBMovie { public static void main(String[] args) throws Exception { if (args.length < 1) { System.out.println("Please specify an output file name."); System.exit(1); } String id = args[0]; // create 20 blank 512x512 image planes System.out.println("Creating random image planes..."); int w = 511, h = 507, numFrames = 20, numChannels = 3; int pixelType = FormatTools.UINT8; int bpp = FormatTools.getBytesPerPixel(pixelType); int planeSize = h * w * numChannels * bpp; byte[][] img = new byte[numFrames][planeSize]; // fill with random data for (int t=0; t<numFrames; t++) { for (int i=0; i<img[t].length; i+=numChannels) { for (int c=0; c<numChannels; c++) { img[t][i + c] = (byte) (256 * Math.random()); } } } // create metadata object with required metadata fields System.out.println("Populating metadata..."); ServiceFactory factory = new ServiceFactory(); OMEXMLService service = factory.getInstance(OMEXMLService.class); IMetadata meta = service.createOMEXMLMetadata(); MetadataTools.populateMetadata(meta, 0, null, false, "XYZCT", FormatTools.getPixelTypeString(pixelType), w, h, 1, numChannels, numFrames, numChannels); // write image planes to disk System.out.print("Writing planes to '" + id + "'"); IFormatWriter writer = new ImageWriter(); writer.setMetadataRetrieve(meta); writer.setId(id); for (int t=0; t<numFrames; t++) { System.out.print("."); writer.saveBytes(t, img[t]); } writer.close(); System.out.println("Done."); } }