/* * #%L * OME Bio-Formats package for reading and converting biological file formats. * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ import java.io.IOException; import loci.common.services.DependencyException; import loci.common.services.ServiceException; import loci.common.services.ServiceFactory; import loci.formats.FormatException; import loci.formats.ImageReader; import loci.formats.meta.IMetadata; import loci.formats.services.OMEXMLService; /** * Extracts and prints out the OME-XML for a given file. */ public class DumpOMEXML { public static void main(String[] args) throws Exception { if (args.length == 0) { System.out.println("Usage: java DumpOMEXML file1 file2 ..."); return; } for (int i=0; i<args.length; i++) dumpOMEXML(args[i]); } public static void dumpOMEXML(String path) throws FormatException, IOException, DependencyException, ServiceException { ServiceFactory serviceFactory = new ServiceFactory(); OMEXMLService omexmlService = serviceFactory.getInstance(OMEXMLService.class); IMetadata meta = omexmlService.createOMEXMLMetadata(); ImageReader r = new ImageReader(); r.setMetadataStore(meta); r.setOriginalMetadataPopulated(true); r.setId(path); r.close(); String xml = omexmlService.getOMEXML(meta); System.out.println(xml); } }