/*
* #%L
* OME Bio-Formats package for reading and converting biological file formats.
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-2.0.html>.
* #L%
*/
import java.io.IOException;
import loci.common.services.DependencyException;
import loci.common.services.ServiceException;
import loci.common.services.ServiceFactory;
import loci.formats.FormatException;
import loci.formats.ImageReader;
import loci.formats.meta.IMetadata;
import loci.formats.services.OMEXMLService;
/**
* Extracts and prints out the OME-XML for a given file.
*/
public class DumpOMEXML {
public static void main(String[] args) throws Exception {
if (args.length == 0) {
System.out.println("Usage: java DumpOMEXML file1 file2 ...");
return;
}
for (int i=0; i<args.length; i++) dumpOMEXML(args[i]);
}
public static void dumpOMEXML(String path) throws FormatException,
IOException, DependencyException, ServiceException
{
ServiceFactory serviceFactory = new ServiceFactory();
OMEXMLService omexmlService =
serviceFactory.getInstance(OMEXMLService.class);
IMetadata meta = omexmlService.createOMEXMLMetadata();
ImageReader r = new ImageReader();
r.setMetadataStore(meta);
r.setOriginalMetadataPopulated(true);
r.setId(path);
r.close();
String xml = omexmlService.getOMEXML(meta);
System.out.println(xml);
}
}