/*
* #%L
* OME Bio-Formats package for reading and converting biological file formats.
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-2.0.html>.
* #L%
*/
package loci.formats.utests;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNotNull;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import ome.xml.model.Annotation;
import ome.xml.model.Channel;
import ome.xml.model.Image;
import ome.xml.model.OME;
import ome.xml.model.OMEModel;
import ome.xml.model.OMEModelImpl;
import ome.xml.model.Pixels;
import ome.xml.model.XMLAnnotation;
import ome.xml.model.enums.EnumerationException;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
import org.w3c.dom.Document;
/**
* Test case which outlines the problems seen in omero:#3269.
*
* @author Chris Allan <callan at blackcat dot ca>
*/
public class XMLAnnotationTest {
private OME ome;
@BeforeClass
public void setUp() throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder parser = factory.newDocumentBuilder();
Document document = parser.parse(
this.getClass().getResourceAsStream("XMLAnnotationTest.ome"));
OMEModel model = new OMEModelImpl();
// Read string XML in as a DOM tree and parse into the object hierarchy
ome = new OME(document.getDocumentElement(), model);
model.resolveReferences();
}
@Test
public void testValidXMLAnnotation() throws EnumerationException {
assertNotNull(ome);
assertEquals(1, ome.sizeOfImageList());
Image image = ome.getImage(0);
Pixels pixels = image.getPixels();
assertNotNull(pixels);
assertEquals(3, pixels.sizeOfChannelList());
Channel channel = pixels.getChannel(0);
assertEquals(1, channel.sizeOfLinkedAnnotationList());
Annotation annotation = channel.getLinkedAnnotation(0);
assertEquals(XMLAnnotation.class, annotation.getClass());
String annotationValue = ((XMLAnnotation) annotation).getValue();
// normalize line endings if the test is run on Windows
annotationValue = annotationValue.replaceAll("\r\n", "\n");
assertEquals("<TestData>\n <key>foo</key>\n\t\t\t\t\t<value>bar</value>\n </TestData>", annotationValue);
}
}