/* * #%L * OME Bio-Formats package for reading and converting biological file formats. * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ import java.io.IOException; import loci.formats.FormatException; import loci.formats.IFormatReader; import loci.formats.ImageReader; /** * Demonstration of the sub-resolution API. */ public class SubResolutionExample { public static void main(String[] args) throws FormatException, IOException { // parse command line arguments if (args.length < 1) { System.err.println("Usage: java SubResolutionExample imageFile"); System.exit(1); } String id = args[0]; // configure reader IFormatReader reader = new ImageReader(); reader.setFlattenedResolutions(false); System.out.println("Initializing file: " + id); reader.setId(id); // parse metadata int seriesCount = reader.getSeriesCount(); System.out.println(" Series count = " + seriesCount); for (int series=0; series<seriesCount; series++) { reader.setSeries(series); int resolutionCount = reader.getResolutionCount(); System.out.println(" Resolution count for series #" + series + " = " + resolutionCount); for (int r=0; r<resolutionCount; r++) { reader.setResolution(r); System.out.println(" Resolution #" + r + " dimensions = " + reader.getSizeX() + " x " + reader.getSizeY()); } } reader.close(); } }