/*
* #%L
* BSD implementations of Bio-Formats readers and writers
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package loci.formats.codec;
import java.io.BufferedInputStream;
import java.io.ByteArrayInputStream;
import java.io.IOException;
import loci.common.DataTools;
import loci.common.RandomAccessInputStream;
import loci.common.services.DependencyException;
import loci.common.services.ServiceException;
import loci.common.services.ServiceFactory;
import loci.formats.FormatException;
import loci.formats.MissingLibraryException;
import loci.formats.UnsupportedCompressionException;
import loci.formats.services.LuraWaveService;
import loci.formats.services.LuraWaveServiceImpl;
/**
* This class provides LuraWave decompression, using LuraWave's Java decoding
* library. Compression is not supported. Decompression requires a LuraWave
* license code, specified in the lurawave.license system property (e.g.,
* <code>-Dlurawave.license=XXXX</code> on the command line).
*
* @author Curtis Rueden ctrueden at wisc.edu
*/
public class LuraWaveCodec extends BaseCodec {
// -- Fields --
private LuraWaveService service;
// -- Codec API methods --
/* @see Codec#compress(byte[], CodecOptions) */
@Override
public byte[] compress(byte[] data, CodecOptions options)
throws FormatException
{
throw new UnsupportedCompressionException(
"LuraWave compression not supported");
}
/* @see Codec#decompress(RandomAccessInputStream, CodecOptions) */
@Override
public byte[] decompress(RandomAccessInputStream in, CodecOptions options)
throws FormatException, IOException
{
byte[] buf = new byte[(int) in.length()];
in.read(buf);
return decompress(buf, options);
}
/**
* The CodecOptions parameter should have the following fields set:
* {@link CodecOptions#maxBytes maxBytes}
*
* @see Codec#decompress(byte[], CodecOptions)
*/
@Override
public byte[] decompress(byte[] buf, CodecOptions options)
throws FormatException
{
initialize();
BufferedInputStream stream =
new BufferedInputStream(new ByteArrayInputStream(buf), 4096);
try {
service.initialize(stream);
}
catch (DependencyException e) {
throw new FormatException(LuraWaveServiceImpl.NO_LICENSE_MSG, e);
}
catch (ServiceException e) {
throw new FormatException(LuraWaveServiceImpl.INVALID_LICENSE_MSG, e);
}
catch (IOException e) {
throw new FormatException(e);
}
int w = service.getWidth();
int h = service.getHeight();
int nbits = 8 * (options.maxBytes / (w * h));
if (nbits == 8) {
byte[] image8 = new byte[w * h];
try {
service.decodeToMemoryGray8(image8, -1, 1024, 0);
}
catch (ServiceException e) {
throw new FormatException(LuraWaveServiceImpl.INVALID_LICENSE_MSG, e);
}
return image8;
}
else if (nbits == 16) {
short[] image16 = new short[w * h];
try {
service.decodeToMemoryGray16(image16, 0, -1, 1024, 0, 1, w, 0, 0, w, h);
}
catch (ServiceException e) {
throw new FormatException(LuraWaveServiceImpl.INVALID_LICENSE_MSG, e);
}
byte[] output = new byte[w * h * 2];
for (int i=0; i<image16.length; i++) {
DataTools.unpackBytes(image16[i], output, i * 2, 2, true);
}
return output;
}
throw new FormatException("Unsupported bits per pixel: " + nbits);
}
// -- Helper methods --
/**
* Initializes the LuraWave dependency service. This is called at the
* beginning of the {@link #decompress} method to avoid having the
* constructor's method definition contain a checked exception.
*
* @throws FormatException If there is an error initializing LuraWave
* services.
*/
private void initialize() throws FormatException {
if (service != null) return;
try {
ServiceFactory factory = new ServiceFactory();
service = factory.getInstance(LuraWaveService.class);
}
catch (DependencyException e) {
throw new MissingLibraryException(LuraWaveServiceImpl.NO_LURAWAVE_MSG, e);
}
}
}