/* * #%L * BSD implementations of Bio-Formats readers and writers * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * 2. Redistributions in binary form must reproduce the above copyright notice, * this list of conditions and the following disclaimer in the documentation * and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE * POSSIBILITY OF SUCH DAMAGE. * #L% */ package loci.formats.meta; import loci.common.xml.XMLTools; import loci.formats.Modulo; import loci.formats.ome.OMEXMLMetadata; import ome.xml.model.XMLAnnotation; import org.w3c.dom.Document; import org.w3c.dom.Element; public class ModuloAnnotation extends XMLAnnotation { public static final String MODULO_NS; static { MODULO_NS = "openmicroscopy.org/omero/dimension/modulo"; } private Modulo modulo; /** * Set the value of this annotation using the given Modulo object * @param meta the associated OMEXMLMetadata * @param m the Modulo object from which to retrieve dimension information */ public void setModulo(OMEXMLMetadata meta, Modulo m) { modulo = m; setNamespace(MODULO_NS); Document doc = XMLTools.createDocument(); Element r = makeModuloElement(doc); setValue(XMLTools.dumpXML(null, doc, r, false)); } /** * Construct a DOM element for this annotation using * the given Document as the root. * @param document the root document node */ protected Element makeModuloElement(Document document) { Element mtop = document.createElement("Modulo"); mtop.setAttribute("namespace", "http://www.openmicroscopy.org/Schemas/Additions/2011-09"); // TODO: the above should likely NOT be hard-coded Element m = document.createElement("ModuloAlong" + modulo.parentDimension); mtop.appendChild(m); String type = modulo.type; String typeDescription = modulo.typeDescription; if (type != null) { type = type.toLowerCase(); } // Handle CZI files for the moment. // TODO: see https://trac.openmicroscopy.org/ome/ticket/11720 if (type.equals("rotation")) { type = "angle"; } if (type == null || (!type.equals("angle") && !type.equals("phase") && !type.equals("tile") && !type.equals("lifetime") && !type.equals("lambda"))) { if (typeDescription == null) { typeDescription = type; } type = "other"; } m.setAttribute("Type", type); m.setAttribute("TypeDescription", typeDescription); if (modulo.unit != null) { m.setAttribute("Unit", modulo.unit); } if (modulo.end > modulo.start) { m.setAttribute("Start", String.valueOf(modulo.start)); m.setAttribute("Step", String.valueOf(modulo.step)); m.setAttribute("End", String.valueOf(modulo.end)); } if (modulo.labels != null) { for (String label : modulo.labels) { Element labelNode = document.createElement("Label"); labelNode.setTextContent(label); m.appendChild(labelNode); } } return mtop; } }