/* * #%L * Bio-Formats Plugins for ImageJ: a collection of ImageJ plugins including the * Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, * Data Browser and Stack Slicer. * %% * Copyright (C) 2006 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ package loci.plugins.in; import java.awt.Dialog; import java.awt.Panel; import java.awt.image.BufferedImage; import java.io.IOException; import java.util.Arrays; import javax.swing.ImageIcon; import javax.swing.JLabel; import loci.common.DebugTools; import loci.formats.FormatException; import loci.formats.IFormatReader; import loci.formats.gui.AWTImageTools; import loci.formats.gui.BufferedImageReader; import loci.plugins.BF; /** * Loads thumbnails for Bio-Formats Importer * series chooser in a separate thread. */ public class ThumbLoader implements Runnable { // -- Fields -- private BufferedImageReader ir; private Panel[] p; private Dialog dialog; private boolean stop; private Thread loader; // -- Constructor -- /** * Constructs a new thumbnail loader. * @param ir the reader to use for obtaining the thumbnails * @param p the panels upon which to populate the results * @param dialog the dialog containing the panels */ public ThumbLoader(IFormatReader ir, Panel[] p, Dialog dialog) { this.ir = BufferedImageReader.makeBufferedImageReader(ir); this.p = p; this.dialog = dialog; loader = new Thread(this, "BioFormats-ThumbLoader"); loader.start(); } // -- ThumbLoader methods -- /** Instructs the thumbnail loader to stop loading thumbnails. */ public void stop() { if (loader == null) return; stop = true; BF.status(false, "Canceling thumbnail generation"); try { loader.join(); loader = null; } catch (InterruptedException exc) { exc.printStackTrace(); } BF.status(false, ""); } // -- Runnable methods -- /** Does the work of loading the thumbnails. */ @Override public void run() { BF.status(false, "Gathering series information"); int seriesCount = ir.getSeriesCount(); // find image plane for each series and sort by size SeriesInfo[] info = new SeriesInfo[seriesCount]; for (int i=0; i<seriesCount; i++) { if (stop) return; ir.setSeries(i); info[i] = new SeriesInfo(i, ir.getSizeX() * ir.getSizeY()); } if (stop) return; Arrays.sort(info); // open each thumbnail, fastest/smallest first for (int i=0; i<seriesCount; i++) { if (stop) return; final int ii = info[i].index; loadThumb(ir, ii, p[ii], false); if (dialog != null) dialog.validate(); } } // -- Helper methods -- public static void loadThumb(BufferedImageReader thumbReader, int series, Panel panel, boolean quiet) { BF.status(quiet, "Reading thumbnail for series #" + (series + 1)); thumbReader.setSeries(series); // open middle image thumbnail int z = thumbReader.getSizeZ() / 2; int t = thumbReader.getSizeT() / 2; int ndx = thumbReader.getIndex(z, 0, t); Exception exc = null; try { BufferedImage thumb = thumbReader.openThumbImage(ndx); thumb = AWTImageTools.autoscale(thumb); ImageIcon icon = new ImageIcon(thumb); panel.removeAll(); panel.add(new JLabel(icon)); } catch (FormatException e) { exc = e; } catch (IOException e) { exc = e; } if (exc != null) { BF.warn(quiet, "Error loading thumbnail for series #" + (series + 1)); BF.debug(DebugTools.getStackTrace(exc)); } } // -- Helper classes -- /** Helper class for sorting series by image plane size. */ public class SeriesInfo implements Comparable<SeriesInfo> { private int index, size; public SeriesInfo(int index, int size) { this.index = index; this.size = size; } @Override public int compareTo(SeriesInfo info) { return size - info.size; } } }