/* * #%L * OME Bio-Formats package for reading and converting biological file formats. * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ package loci.formats.services; import java.io.File; import java.io.IOException; import java.io.InputStream; import java.util.Hashtable; import java.util.Iterator; import java.util.Vector; import loci.common.RandomAccessInputStream; import loci.common.services.AbstractService; import loci.poi.poifs.filesystem.DirectoryEntry; import loci.poi.poifs.filesystem.DocumentEntry; import loci.poi.poifs.filesystem.DocumentInputStream; import loci.poi.poifs.filesystem.Entry; import loci.poi.poifs.filesystem.POIFSFileSystem; /** */ public class POIServiceImpl extends AbstractService implements POIService { private static final int MAX_BLOCK_SIZE = 4096; // -- Fields -- private POIFSFileSystem fileSystem; private DirectoryEntry root; private RandomAccessInputStream stream; private Vector<String> filePath; private Hashtable<String, Integer> fileSizes; private Hashtable<String, DocumentEntry> files; // -- POIService API methods -- /** * Default constructor. */ public POIServiceImpl() { // Just checking a single class in loci.poi.poifs.filesystem package checkClassDependency(loci.poi.poifs.filesystem.DirectoryEntry.class); } /* @see POIService#initialize(String) */ @Override public void initialize(String file) throws IOException { initialize(new RandomAccessInputStream(file, MAX_BLOCK_SIZE)); } /* @see POIService#initialize(RandomAccessInputStream) */ @Override public void initialize(RandomAccessInputStream s) throws IOException { // determine the size of a 'big' block stream = s; stream.order(true); stream.seek(30); int size = (int) Math.pow(2, stream.readShort()); stream.seek(0); // initialize the file system fileSystem = new POIFSFileSystem(stream, size); root = fileSystem.getRoot(); // build the list of files in the file system filePath = new Vector<String>(); fileSizes = new Hashtable<String, Integer>(); files = new Hashtable<String, DocumentEntry>(); parseFile(root); } /* @see POIService#getInputStream(String) */ @Override public InputStream getInputStream(String file) throws IOException { return new DocumentInputStream(files.get(file), stream); } /* @see POIService#getDocumentStream(String) */ @Override public RandomAccessInputStream getDocumentStream(String file) throws IOException { return new RandomAccessInputStream(getDocumentBytes(file)); } /* @see POIService#getDocumentBytes(String) */ @Override public byte[] getDocumentBytes(String file) throws IOException { return getDocumentBytes(file, getFileSize(file)); } /* @see POIService#getDocumentBytes(String, int) */ @Override public byte[] getDocumentBytes(String file, int length) throws IOException { int size = getFileSize(file); int len = length > size ? size : length; byte[] buf = new byte[len]; InputStream s = getInputStream(file); s.read(buf); s.close(); return buf; } /* @see POIService#getFileSize(String) */ @Override public int getFileSize(String file) { if (fileSizes.containsKey(file)) { return fileSizes.get(file); } return -1; } /* @see POIService#getDocumentList() */ @Override public Vector<String> getDocumentList() { Vector<String> list = new Vector<String>(); list.addAll(fileSizes.keySet()); return list; } /* @see POIService#close() */ @Override public void close() throws IOException { fileSystem = null; root = null; if (stream != null) stream.close(); stream = null; filePath = null; fileSizes = null; files = null; } // -- Helper methods -- private void parseFile(DirectoryEntry r) throws IOException { filePath.add(r.getName()); Iterator iter = r.getEntries(); while (iter.hasNext()) { Entry o = (Entry) iter.next(); boolean isInstance = o.isDirectoryEntry(); boolean isDocument = o.isDocumentEntry(); if (isInstance) parseFile((DirectoryEntry) o); else if (isDocument) { StringBuffer path = new StringBuffer(); for (String p : filePath) { path.append(p); path.append(File.separator); } path.append(o.getName()); DocumentInputStream s = new DocumentInputStream((DocumentEntry) o, stream); fileSizes.put(path.toString(), s.available()); files.put(path.toString(), (DocumentEntry) o); s.close(); } } filePath.removeElementAt(filePath.size() - 1); } }