/* * #%L * Bio-Formats Plugins for ImageJ: a collection of ImageJ plugins including the * Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, * Data Browser and Stack Slicer. * %% * Copyright (C) 2006 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ package loci.plugins.util; import ij.process.ImageProcessor; import java.io.IOException; import loci.formats.FormatException; import loci.formats.IFormatReader; import loci.formats.cache.CacheException; import loci.formats.cache.ICacheSource; /** * Retrieves ImageJ image processors from an image reader. */ public class ImageProcessorSource implements ICacheSource { // -- Fields -- /** Image reader from which to draw ImageProcessors. */ protected ImageProcessorReader reader; // -- Constructors -- public ImageProcessorSource(IFormatReader reader) { if (reader instanceof ImageProcessorReader) { this.reader = (ImageProcessorReader) reader; } else { this.reader = new ImageProcessorReader(reader); } } // -- ICacheSource API methods -- /* @see loci.formats.cache.ICacheSource#getObject(int) */ @Override public int getObjectCount() { return reader.getImageCount(); } /* @see loci.formats.cache.ICacheSource#getObject(int) */ @Override public Object getObject(int index) throws CacheException { // assumes that channels are separated ImageProcessor ip = null; try { ip = reader.openProcessors(index)[0]; } catch (FormatException exc) { throw new CacheException(exc); } catch (IOException exc) { throw new CacheException(exc); } return ip; } }