/* * #%L * Common package for I/O and related utilities * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * 2. Redistributions in binary form must reproduce the above copyright notice, * this list of conditions and the following disclaimer in the documentation * and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE * POSSIBILITY OF SUCH DAMAGE. * #L% */ package loci.common.utests; import static org.testng.AssertJUnit.assertEquals; import java.io.IOException; import java.util.Random; import loci.common.ByteArrayHandle; import loci.common.IRandomAccess; import loci.common.RandomAccessInputStream; import loci.common.RandomAccessOutputStream; import loci.common.utests.providers.IRandomAccessProvider; import loci.common.utests.providers.IRandomAccessProviderFactory; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Parameters; import org.testng.annotations.Test; /** * Tests for reading bytes from a loci.common.RandomAccessInputStream. * * @see loci.common.RandomAccessInputStream */ @Test(groups="readTests") public class RandomAccessInputStreamTest { private static final byte[] PAGE = new byte[] { 0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68, 72, 76, 80, 84, 88, 92, 96, 100, 104, 108, 112, 116, 120, 124, (byte) 128, (byte) 132, (byte) 136, (byte) 140, (byte) 144, (byte) 148, (byte) 152, (byte) 156, (byte) 160, (byte) 164, (byte) 168, (byte) 172, (byte) 176, (byte) 180, (byte) 184, (byte) 188, (byte) 192, (byte) 196, (byte) 200, (byte) 204, (byte) 208, (byte) 212, (byte) 216, (byte) 220, (byte) 224, (byte) 228, (byte) 232, (byte) 236, (byte) 240, (byte) 244, (byte) 248, (byte) 252 }; private static final String MODE = "r"; private static final int BUFFER_SIZE = 2; private RandomAccessInputStream stream; private IRandomAccess fileHandle; @Parameters({"provider"}) @BeforeMethod public void setUp(String provider) throws IOException { IRandomAccessProviderFactory factory = new IRandomAccessProviderFactory(); IRandomAccessProvider instance = factory.getInstance(provider); fileHandle = instance.createMock(PAGE, MODE, BUFFER_SIZE); stream = new RandomAccessInputStream(fileHandle); } @Test public void testLength() throws IOException { assertEquals(PAGE.length, stream.length()); } @Test public void testSequentialRead() throws IOException { stream.seek(0); for (int i=0; i<stream.length(); i++) { assertEquals(PAGE[i], stream.readByte()); } } @Test public void testReverseSequentialRead() throws IOException { stream.seek(stream.length() - 1); for (int i=PAGE.length-1; i>=0; i--) { assertEquals(PAGE[i], stream.readByte()); if (stream.getFilePointer() >= 2) { stream.seek(stream.getFilePointer() - 2); } } } @Test public void testArrayRead() throws IOException { stream.seek(0); byte[] buf = new byte[PAGE.length]; stream.read(buf); for (int i=0; i<PAGE.length; i++) { assertEquals(PAGE[i], buf[i]); } } @Test public void testRandomRead() throws IOException { long fp = PAGE.length / 2; stream.seek(fp); for (int i=0; i<PAGE.length; i++) { boolean forward = (i % 2) == 0; int step = i / 2; if (forward) { stream.seek(fp + step); } else { stream.seek(fp - step); } assertEquals(PAGE[(int) stream.getFilePointer()], stream.readByte()); } } @Test public void testBitRead() throws IOException { int count = 50000; int[] nums = new int[count]; int[] len = new int[count]; ByteArrayHandle handle = new ByteArrayHandle(); RandomAccessOutputStream out = new RandomAccessOutputStream(handle); Random r = new Random(); for (int i=0; i<count; i++) { if (i % 32 == 31) { nums[i] = r.nextInt(); } else { nums[i] = r.nextInt(1 << (i % 32)); } len[i] = Integer.toBinaryString(nums[i]).length(); out.writeBits(nums[i], len[i]); } out.close(); RandomAccessInputStream in = new RandomAccessInputStream(handle); in.seek(0); try { for (int i=0; i<count; i++) { int c = r.nextInt(100); if (c >= 50) { int v = in.readBits(len[i]); assertEquals(v, nums[i]); } else { in.skipBits(len[i]); } } } finally { in.close(); } } }