/*
* #%L
* OME Bio-Formats package for reading and converting biological file formats.
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-2.0.html>.
* #L%
*/
import loci.common.services.ServiceFactory;
import loci.formats.ImageReader;
import loci.formats.meta.IMetadata;
import loci.formats.out.TiffWriter;
import loci.formats.services.OMEXMLService;
/**
* Converts the given image file to an LZW-compressed TIFF.
*/
public class MakeLZW {
public static void main(String[] args) throws Exception {
ImageReader reader = new ImageReader();
ServiceFactory factory = new ServiceFactory();
OMEXMLService service = factory.getInstance(OMEXMLService.class);
IMetadata omexmlMeta = service.createOMEXMLMetadata();
reader.setMetadataStore(omexmlMeta);
TiffWriter writer = new TiffWriter();
for (int i=0; i<args.length; i++) {
String inFile = args[i];
String outFile = "lzw-" + inFile;
System.out.print("Converting " + inFile + " to " + outFile);
reader.setId(inFile);
writer.setMetadataRetrieve(omexmlMeta);
writer.setCompression("LZW");
writer.setId(outFile);
int planeCount = reader.getImageCount();
for (int p=0; p<planeCount; p++) {
System.out.print(".");
byte[] plane = reader.openBytes(p);
writer.saveBytes(p, plane);
}
System.out.println(" [done]");
}
}
}