/*
* #%L
* OME Bio-Formats package for reading and converting biological file formats.
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-2.0.html>.
* #L%
*/
package loci.formats.utests.xml;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNotNull;
import java.io.InputStream;
import loci.common.services.ServiceException;
import loci.common.services.ServiceFactory;
import loci.formats.ome.OMEXMLMetadata;
import loci.formats.services.OMEXMLService;
import ome.xml.model.Channel;
import ome.xml.model.Image;
import ome.xml.model.OME;
import ome.xml.model.Pixels;
import ome.xml.model.enums.AcquisitionMode;
import org.testng.annotations.BeforeMethod;
import org.testng.annotations.Test;
/**
*
* @author Colin Blackburn <cblackburn at dundee dot ac dot uk>
*/
public class Upgrade200909Test {
private static final String XML_FILE = "2009-09.ome";
private OMEXMLService service;
private String xml;
private OMEXMLMetadata metadata;
private OME ome;
@BeforeMethod
public void setUp() throws Exception {
ServiceFactory sf = new ServiceFactory();
service = sf.getInstance(OMEXMLService.class);
InputStream s = Upgrade200909Test.class.getResourceAsStream(XML_FILE);
byte[] b = new byte[s.available()];
s.read(b);
s.close();
xml = new String(b);
metadata = service.createOMEXMLMetadata(xml);
ome = (OME) metadata.getRoot();
}
@Test
public void getOMEXMLVersion() throws ServiceException {
assertEquals("2015-01", service.getOMEXMLVersion(metadata));
}
@Test
public void validateUpgrade() throws ServiceException {
assertEquals(1, ome.sizeOfImageList());
Image image = ome.getImage(0);
Pixels pixels = image.getPixels();
assertNotNull(pixels);
assertEquals(1, pixels.sizeOfChannelList());
Channel channel = pixels.getChannel(0);
// XSLT transform of Channel.AcquisitionMode
// <map from="LaserScanningMicroscopy" to="LaserScanningConfocalMicroscopy"/>
assertEquals(AcquisitionMode.LASERSCANNINGCONFOCALMICROSCOPY, channel.getAcquisitionMode());
}
}