/*
* #%L
* Tests for OME Bio-Formats BSD-licensed readers and writers.
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*
* The views and conclusions contained in the software and documentation are
* those of the authors and should not be interpreted as representing official
* policies, either expressed or implied, of any organization.
* #L%
*/
package loci.formats.utests;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertTrue;
import static org.testng.AssertJUnit.assertFalse;
import static org.testng.AssertJUnit.assertNotNull;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import ome.xml.model.Image;
import ome.xml.model.ImagingEnvironment;
import ome.xml.model.Map;
import ome.xml.model.MapPair;
import ome.xml.model.OME;
import ome.xml.model.OMEModel;
import ome.xml.model.OMEModelImpl;
import ome.xml.model.Pixels;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
/**
* Test case for ImagingEnvironment Map values
*
* @author Andrew Patterson
*/
public class ImagingEnvironmentMapTest {
private OME ome = new OME();
@BeforeClass
public void setUp() throws Exception {
// Add an Image/Pixels
Image image = new Image();
image.setID("Image:0");
Pixels pixels = new Pixels();
pixels.setID("Pixels:0");
image.setPixels(pixels);
// Add an ImagingEnvironment with an Map
ImagingEnvironment imagingEnvironment = new ImagingEnvironment();
Map dataMap = new Map();
dataMap.getPairs().add(new MapPair("a","1"));
dataMap.getPairs().add(new MapPair("b","2"));
dataMap.getPairs().add(new MapPair("c","3"));
dataMap.getPairs().add(new MapPair("d","4"));
dataMap.getPairs().add(new MapPair("e","5"));
imagingEnvironment.setMap(dataMap);
image.setImagingEnvironment(imagingEnvironment);
ome.addImage(image);
}
@Test
public void testGenericExcitationSourceValid() throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder parser = factory.newDocumentBuilder();
Document document = parser.newDocument();
// Produce a valid OME DOM element hierarchy
Element root = ome.asXMLElement(document);
SPWModelMock.postProcess(root, document, false);
OMEModel model = new OMEModelImpl();
ome = new OME(document.getDocumentElement(), model);
model.resolveReferences();
}
@Test
public void testGenericExcitationSourceMapContent() throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder parser = factory.newDocumentBuilder();
Document document = parser.newDocument();
// Produce a valid OME DOM element hierarchy
Element root = ome.asXMLElement(document);
SPWModelMock.postProcess(root, document, false);
OMEModel model = new OMEModelImpl();
ome = new OME(document.getDocumentElement(), model);
model.resolveReferences();
assertNotNull(ome);
assertEquals(ome.getImage(0).getPixels().getID(), "Pixels:0");
assertNotNull(ome.getImage(0).getImagingEnvironment());
ImagingEnvironment imagingEnvironment = ome.getImage(0).getImagingEnvironment();
Map dataMap = imagingEnvironment.getMap();
assertEquals(5, dataMap.getPairs().size());
assertPair(dataMap, 0, "a", "1");
assertPair(dataMap, 1, "b", "2");
assertPair(dataMap, 2, "c", "3");
assertPair(dataMap, 3, "d", "4");
assertPair(dataMap, 4, "e", "5");
}
void assertPair(Map dataMap, int idx, String name, String value) {
assertEquals(name, dataMap.getPairs().get(idx).getName());
assertEquals(value, dataMap.getPairs().get(idx).getValue());
}
}