/* * #%L * Tests for OME Bio-Formats BSD-licensed readers and writers. * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * 2. Redistributions in binary form must reproduce the above copyright notice, * this list of conditions and the following disclaimer in the documentation * and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE * POSSIBILITY OF SUCH DAMAGE. * * The views and conclusions contained in the software and documentation are * those of the authors and should not be interpreted as representing official * policies, either expressed or implied, of any organization. * #L% */ package loci.formats.utests; import static org.testng.AssertJUnit.assertEquals; import static org.testng.AssertJUnit.assertTrue; import static org.testng.AssertJUnit.assertFalse; import static org.testng.AssertJUnit.assertNotNull; import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilderFactory; import ome.xml.model.Channel; import ome.xml.model.Image; import ome.xml.model.Instrument; import ome.xml.model.LightSourceSettings; import ome.xml.model.GenericExcitationSource; import ome.xml.model.Map; import ome.xml.model.OME; import ome.xml.model.OMEModel; import ome.xml.model.OMEModelImpl; import ome.xml.model.Pixels; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; import org.w3c.dom.Document; import org.w3c.dom.Element; /** * Test case for GenericExcitationSource Map values * * @author Andrew Patterson */ public class GenericExcitationMapTest { private OME ome = new OME(); @BeforeClass public void setUp() throws Exception { Instrument instrument = new Instrument(); instrument.setID("Instrument:0"); // Add a GenericExcitationSource with an Map GenericExcitationSource geSource = new GenericExcitationSource(); geSource.setID("LightSource:0"); Map dataMap = new Map(); assertPair(dataMap, 0, "a", "1"); assertPair(dataMap, 1, "b", "2"); assertPair(dataMap, 2, "c", "3"); assertPair(dataMap, 3, "d", "4"); assertPair(dataMap, 4, "e", "5"); geSource.setMap(dataMap); instrument.addLightSource(geSource); ome.addInstrument(instrument); // Add an Image/Pixels with a LightSourceSettings reference to the // GenericExcitationSource on one of its channels. Image image = new Image(); image.setID("Image:0"); Pixels pixels = new Pixels(); pixels.setID("Pixels:0"); Channel channel = new Channel(); channel.setID("Channel:0"); LightSourceSettings settings = new LightSourceSettings(); settings.setID("LightSource:0"); channel.setLightSourceSettings(settings); pixels.addChannel(channel); image.setPixels(pixels); ome.addImage(image); } @Test public void testGenericExcitationSourceValid() throws Exception { DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder parser = factory.newDocumentBuilder(); Document document = parser.newDocument(); // Produce a valid OME DOM element hierarchy Element root = ome.asXMLElement(document); SPWModelMock.postProcess(root, document, false); OMEModel model = new OMEModelImpl(); ome = new OME(document.getDocumentElement(), model); model.resolveReferences(); } @Test public void testGenericExcitationSourceMapContent() throws Exception { DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder parser = factory.newDocumentBuilder(); Document document = parser.newDocument(); // Produce a valid OME DOM element hierarchy Element root = ome.asXMLElement(document); SPWModelMock.postProcess(root, document, false); OMEModel model = new OMEModelImpl(); ome = new OME(document.getDocumentElement(), model); model.resolveReferences(); assertNotNull(ome); assertEquals(ome.getImage(0).getPixels().getChannel(0).getLightSourceSettings().getID(), "LightSource:0"); assertNotNull(ome.getInstrument(0).getLightSource(0)); GenericExcitationSource geSource = (GenericExcitationSource) ome.getInstrument(0).getLightSource(0); Map dataMap = geSource.getMap(); assertEquals(5, dataMap.getPairs().size()); assertPair(dataMap, 0, "a", "1"); assertPair(dataMap, 1, "b", "2"); assertPair(dataMap, 2, "c", "3"); assertPair(dataMap, 3, "d", "4"); assertPair(dataMap, 4, "e", "5"); } void assertPair(Map dataMap, int idx, String name, String value) { assertEquals(name, dataMap.getPairs().get(idx).getName()); assertEquals(value, dataMap.getPairs().get(idx).getValue()); } }