/*
* #%L
* Tests for OME Bio-Formats BSD-licensed readers and writers.
* %%
* Copyright (C) 2005 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
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* this list of conditions and the following disclaimer.
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*/
package loci.formats.utests;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertTrue;
import static org.testng.AssertJUnit.assertFalse;
import static org.testng.AssertJUnit.assertNotNull;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import ome.xml.model.Channel;
import ome.xml.model.Image;
import ome.xml.model.Instrument;
import ome.xml.model.LightSourceSettings;
import ome.xml.model.GenericExcitationSource;
import ome.xml.model.Map;
import ome.xml.model.OME;
import ome.xml.model.OMEModel;
import ome.xml.model.OMEModelImpl;
import ome.xml.model.Pixels;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
/**
* Test case for GenericExcitationSource Map values
*
* @author Andrew Patterson
*/
public class GenericExcitationMapTest {
private OME ome = new OME();
@BeforeClass
public void setUp() throws Exception {
Instrument instrument = new Instrument();
instrument.setID("Instrument:0");
// Add a GenericExcitationSource with an Map
GenericExcitationSource geSource = new GenericExcitationSource();
geSource.setID("LightSource:0");
Map dataMap = new Map();
assertPair(dataMap, 0, "a", "1");
assertPair(dataMap, 1, "b", "2");
assertPair(dataMap, 2, "c", "3");
assertPair(dataMap, 3, "d", "4");
assertPair(dataMap, 4, "e", "5");
geSource.setMap(dataMap);
instrument.addLightSource(geSource);
ome.addInstrument(instrument);
// Add an Image/Pixels with a LightSourceSettings reference to the
// GenericExcitationSource on one of its channels.
Image image = new Image();
image.setID("Image:0");
Pixels pixels = new Pixels();
pixels.setID("Pixels:0");
Channel channel = new Channel();
channel.setID("Channel:0");
LightSourceSettings settings = new LightSourceSettings();
settings.setID("LightSource:0");
channel.setLightSourceSettings(settings);
pixels.addChannel(channel);
image.setPixels(pixels);
ome.addImage(image);
}
@Test
public void testGenericExcitationSourceValid() throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder parser = factory.newDocumentBuilder();
Document document = parser.newDocument();
// Produce a valid OME DOM element hierarchy
Element root = ome.asXMLElement(document);
SPWModelMock.postProcess(root, document, false);
OMEModel model = new OMEModelImpl();
ome = new OME(document.getDocumentElement(), model);
model.resolveReferences();
}
@Test
public void testGenericExcitationSourceMapContent() throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder parser = factory.newDocumentBuilder();
Document document = parser.newDocument();
// Produce a valid OME DOM element hierarchy
Element root = ome.asXMLElement(document);
SPWModelMock.postProcess(root, document, false);
OMEModel model = new OMEModelImpl();
ome = new OME(document.getDocumentElement(), model);
model.resolveReferences();
assertNotNull(ome);
assertEquals(ome.getImage(0).getPixels().getChannel(0).getLightSourceSettings().getID(), "LightSource:0");
assertNotNull(ome.getInstrument(0).getLightSource(0));
GenericExcitationSource geSource = (GenericExcitationSource) ome.getInstrument(0).getLightSource(0);
Map dataMap = geSource.getMap();
assertEquals(5, dataMap.getPairs().size());
assertPair(dataMap, 0, "a", "1");
assertPair(dataMap, 1, "b", "2");
assertPair(dataMap, 2, "c", "3");
assertPair(dataMap, 3, "d", "4");
assertPair(dataMap, 4, "e", "5");
}
void assertPair(Map dataMap, int idx, String name, String value) {
assertEquals(name, dataMap.getPairs().get(idx).getName());
assertEquals(value, dataMap.getPairs().get(idx).getValue());
}
}