/* * #%L * OME Bio-Formats package for reading and converting biological file formats. * %% * Copyright (C) 2005 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ import loci.common.services.ServiceFactory; import loci.formats.ImageReader; import loci.formats.meta.IMetadata; import loci.formats.services.OMEXMLService; /** * Edits the given file's image name (but does not save back to disk). */ public class EditImageName { public static void main(String[] args) throws Exception { if (args.length != 1) { System.out.println("Usage: java EditImageName file"); return; } ImageReader reader = new ImageReader(); // record metadata to OME-XML format ServiceFactory factory = new ServiceFactory(); OMEXMLService service = factory.getInstance(OMEXMLService.class); IMetadata omexmlMeta = service.createOMEXMLMetadata(); reader.setMetadataStore(omexmlMeta); String id = args[0]; System.out.print("Reading metadata "); reader.setId(id); System.out.println(" [done]"); // get image name String name = omexmlMeta.getImageName(0); System.out.println("Initial Image name = " + name); // change image name (reverse it) char[] arr = name.toCharArray(); for (int i=0; i<arr.length/2; i++) { int i2 = arr.length - i - 1; char c = arr[i]; char c2 = arr[i2]; arr[i] = c2; arr[i2] = c; } name = new String(arr); // save altered name back to OME-XML structure omexmlMeta.setImageName(name, 0); System.out.println("Updated Image name = " + name); // output full OME-XML block System.out.println("Full OME-XML dump:"); String xml = service.getOMEXML(omexmlMeta); System.out.println(xml); } }