/* * #%L * Bio-Formats Plugins for ImageJ: a collection of ImageJ plugins including the * Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, * Data Browser and Stack Slicer. * %% * Copyright (C) 2006 - 2015 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ package loci.plugins; import ij.plugin.PlugIn; import java.util.HashSet; import loci.common.DebugTools; import loci.plugins.in.Importer; import loci.plugins.util.LibraryChecker; /** * ImageJ plugin for reading files using the OME Bio-Formats package. * Wraps core logic in {@link loci.plugins.in.Importer}, to avoid * direct references to classes in the external Bio-Formats library. * * @author Curtis Rueden ctrueden at wisc.edu * @author Melissa Linkert melissa at glencoesoftware.com */ public class LociImporter implements PlugIn { // -- Fields -- /** * Flag indicating whether last operation was successful. * NB: This field must be updated properly, or the plugin * will stop working correctly with HandleExtraFileTypes. */ public boolean success; /** * Flag indicating whether last operation was canceled. * NB: This field must be updated properly, or the plugin * will stop working correctly with HandleExtraFileTypes. */ public boolean canceled; // -- PlugIn API methods -- /** Executes the plugin. */ @Override public void run(String arg) { DebugTools.enableLogging("INFO"); canceled = false; success = false; if (!LibraryChecker.checkJava() || !LibraryChecker.checkImageJ()) return; HashSet<String> missing = new HashSet<String>(); LibraryChecker.checkLibrary(LibraryChecker.Library.BIO_FORMATS, missing); LibraryChecker.checkLibrary(LibraryChecker.Library.OME_JAVA_XML, missing); LibraryChecker.checkLibrary(LibraryChecker.Library.FORMS, missing); if (!LibraryChecker.checkMissing(missing)) return; new Importer(this).run(arg); } }