/*
* #%L
* Bio-Formats Plugins for ImageJ: a collection of ImageJ plugins including the
* Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions,
* Data Browser and Stack Slicer.
* %%
* Copyright (C) 2006 - 2015 Open Microscopy Environment:
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* - University of Dundee
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-2.0.html>.
* #L%
*/
package loci.plugins;
import ij.plugin.PlugIn;
import java.util.HashSet;
import loci.common.DebugTools;
import loci.plugins.in.Importer;
import loci.plugins.util.LibraryChecker;
/**
* ImageJ plugin for reading files using the OME Bio-Formats package.
* Wraps core logic in {@link loci.plugins.in.Importer}, to avoid
* direct references to classes in the external Bio-Formats library.
*
* @author Curtis Rueden ctrueden at wisc.edu
* @author Melissa Linkert melissa at glencoesoftware.com
*/
public class LociImporter implements PlugIn {
// -- Fields --
/**
* Flag indicating whether last operation was successful.
* NB: This field must be updated properly, or the plugin
* will stop working correctly with HandleExtraFileTypes.
*/
public boolean success;
/**
* Flag indicating whether last operation was canceled.
* NB: This field must be updated properly, or the plugin
* will stop working correctly with HandleExtraFileTypes.
*/
public boolean canceled;
// -- PlugIn API methods --
/** Executes the plugin. */
@Override
public void run(String arg) {
DebugTools.enableLogging("INFO");
canceled = false;
success = false;
if (!LibraryChecker.checkJava() || !LibraryChecker.checkImageJ()) return;
HashSet<String> missing = new HashSet<String>();
LibraryChecker.checkLibrary(LibraryChecker.Library.BIO_FORMATS, missing);
LibraryChecker.checkLibrary(LibraryChecker.Library.OME_JAVA_XML, missing);
LibraryChecker.checkLibrary(LibraryChecker.Library.FORMS, missing);
if (!LibraryChecker.checkMissing(missing)) return;
new Importer(this).run(arg);
}
}