//
// ClassList.java
//
/*
OME Bio-Formats package for reading and converting biological file formats.
Copyright (C) 2005-@year@ UW-Madison LOCI and Glencoe Software, Inc.
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
package loci.formats;
import java.io.BufferedReader;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStreamReader;
import java.util.ArrayList;
import java.util.List;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* ClassList is a list of classes for use with ImageReader or ImageWriter,
* parsed from a configuration file such as readers.txt or writers.txt.
*
* <dl><dt><b>Source code:</b></dt>
* <dd><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/ClassList.java">Trac</a>,
* <a href="http://git.openmicroscopy.org/?p=bioformats.git;a=blob;f=components/bio-formats/src/loci/formats/ClassList.java;hb=HEAD">Gitweb</a></dd></dl>
*
* @author Curtis Rueden ctrueden at wisc.edu
*/
public class ClassList<T> {
// -- Constants --
private static final Logger LOGGER = LoggerFactory.getLogger(ClassList.class);
// -- Fields --
/** Base class to which all classes are assignable. */
private Class<T> base;
/** List of classes. */
private List<Class<? extends T>> classes;
// -- Constructor --
/**
* Constructs a list of classes, initially empty.
* @param base Base class to which all classes are assignable.
*/
public ClassList(Class<T> base) {
this.base = base;
classes = new ArrayList<Class<? extends T>>();
}
/**
* Constructs a list of classes from the given configuration file.
* @param file Configuration file containing the list of classes.
* @param base Base class to which all classes are assignable.
* @throws IOException if the file cannot be read.
*/
public ClassList(String file, Class<T> base) throws IOException {
this(file, base, ClassList.class);
}
/**
* Constructs a list of classes from the given configuration file.
* @param file Configuration file containing the list of classes.
* @param base Base class to which all classes are assignable.
* @param location Class indicating which package to search for the file.
* If null, 'file' is interpreted as an absolute path name.
* @throws IOException if the file cannot be read.
*/
public ClassList(String file, Class<T> base, Class<?> location)
throws IOException
{
this.base = base;
classes = new ArrayList<Class<? extends T>>();
if (file == null) return;
// read classes from file
BufferedReader in = null;
if (location == null) {
in = new BufferedReader(new InputStreamReader(new FileInputStream(file)));
}
else {
in = new BufferedReader(new InputStreamReader(
location.getResourceAsStream(file)));
}
while (true) {
String line = null;
line = in.readLine();
if (line == null) break;
// ignore characters following # sign (comments)
int ndx = line.indexOf("#");
if (ndx >= 0) line = line.substring(0, ndx);
line = line.trim();
if (line.equals("")) continue;
// load class
Class<? extends T> c = null;
try {
Class<?> rawClass = Class.forName(line);
c = cast(rawClass);
}
catch (ClassNotFoundException exc) {
LOGGER.debug("Could not find {}", line, exc);
}
catch (NoClassDefFoundError err) {
LOGGER.debug("Could not find {}", line, err);
}
catch (ExceptionInInitializerError err) {
LOGGER.debug("Failed to create an instance of {}", line, err);
}
catch (RuntimeException exc) {
// HACK: workaround for bug in Apache Axis2
String msg = exc.getMessage();
if (msg != null && msg.indexOf("ClassNotFound") < 0) throw exc;
LOGGER.debug("", exc);
}
if (c == null) {
LOGGER.error("\"{}\" is not valid.", line);
continue;
}
classes.add(c);
}
in.close();
}
// -- ClassList API methods --
/**
* Adds the given class, which must be assignable
* to the base class, to the list.
*/
public void addClass(Class<? extends T> c) {
classes.add(c);
}
/** Removes the given class from the list. */
public void removeClass(Class<? extends T> c) {
classes.remove(c);
}
/** Gets the list of classes as an array. */
@SuppressWarnings("unchecked")
public Class<? extends T>[] getClasses() {
return classes.toArray(new Class[0]);
}
// -- Helper methods --
@SuppressWarnings("unchecked")
private Class<? extends T> cast(Class<?> rawClass) {
if (!base.isAssignableFrom(rawClass)) return null;
return (Class<? extends T>) rawClass;
}
}