// // EditImageName.java // import loci.common.services.ServiceFactory; import loci.formats.ImageReader; import loci.formats.meta.IMetadata; import loci.formats.services.OMEXMLService; /** * Edits the given file's image name (but does not save back to disk). * * <dl><dt><b>Source code:</b></dt> * <dd><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/utils/EditImageName.java">Trac</a>, * <a href="http://git.openmicroscopy.org/?p=bioformats.git;a=blob;f=components/bio-formats/utils/EditImageName.java;hb=HEAD">Gitweb</a></dd></dl> */ public class EditImageName { public static void main(String[] args) throws Exception { if (args.length != 1) { System.out.println("Usage: java EditImageName file"); return; } ImageReader reader = new ImageReader(); // record metadata to OME-XML format ServiceFactory factory = new ServiceFactory(); OMEXMLService service = factory.getInstance(OMEXMLService.class); IMetadata omexmlMeta = service.createOMEXMLMetadata(); reader.setMetadataStore(omexmlMeta); String id = args[0]; System.out.print("Reading metadata "); reader.setId(id); System.out.println(" [done]"); // get image name String name = omexmlMeta.getImageName(0); System.out.println("Initial Image name = " + name); // change image name (reverse it) char[] arr = name.toCharArray(); for (int i=0; i<arr.length/2; i++) { int i2 = arr.length - i - 1; char c = arr[i]; char c2 = arr[i2]; arr[i] = c2; arr[i2] = c; } name = new String(arr); // save altered name back to OME-XML structure omexmlMeta.setImageName(name, 0); System.out.println("Updated Image name = " + name); // output full OME-XML block System.out.println("Full OME-XML dump:"); String xml = service.getOMEXML(omexmlMeta); System.out.println(xml); } }