//
// Upgrade200809Test.java
//
/*
OME Bio-Formats package for reading and converting biological file formats.
Copyright (C) 2005-@year@ UW-Madison LOCI and Glencoe Software, Inc.
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
package loci.formats.utests.xml;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNotNull;
import java.io.InputStream;
import loci.common.services.ServiceException;
import loci.common.services.ServiceFactory;
import loci.formats.ome.OMEXMLMetadata;
import loci.formats.services.OMEXMLService;
import ome.xml.model.Channel;
import ome.xml.model.Image;
import ome.xml.model.OME;
import ome.xml.model.Pixels;
import ome.xml.model.enums.AcquisitionMode;
import org.testng.annotations.BeforeMethod;
import org.testng.annotations.Test;
/**
* <dl><dt><b>Source code:</b></dt>
* <dd><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/test/loci/formats/utests/Upgrade200909Test.java">Trac</a>,
* <a href="http://git.openmicroscopy.org/?p=bioformats.git;a=blob;f=components/bio-formats/test/loci/formats/utests/Upgrade200909Test.java;hb=HEAD">Gitweb</a></dd></dl>
*
* @author Colin Blackburn <cblackburn at dundee dot ac dot uk>
*/
public class Upgrade200909Test {
private static final String XML_FILE = "2009-09.ome";
private OMEXMLService service;
private String xml;
private OMEXMLMetadata metadata;
private OME ome;
@BeforeMethod
public void setUp() throws Exception {
ServiceFactory sf = new ServiceFactory();
service = sf.getInstance(OMEXMLService.class);
InputStream s = Upgrade200909Test.class.getResourceAsStream(XML_FILE);
byte[] b = new byte[s.available()];
s.read(b);
s.close();
xml = new String(b);
metadata = service.createOMEXMLMetadata(xml);
ome = (OME) metadata.getRoot();
}
@Test
public void getOMEXMLVersion() throws ServiceException {
assertEquals("2011-06", service.getOMEXMLVersion(metadata));
}
@Test
public void validateUpgrade() throws ServiceException {
assertEquals(1, ome.sizeOfImageList());
Image image = ome.getImage(0);
Pixels pixels = image.getPixels();
assertNotNull(pixels);
assertEquals(1, pixels.sizeOfChannelList());
Channel channel = pixels.getChannel(0);
// XSLT transform of Channel.AcquisitionMode
// <map from="LaserScanningMicroscopy" to="LaserScanningConfocalMicroscopy"/>
assertEquals(AcquisitionMode.LASERSCANNINGCONFOCALMICROSCOPY, channel.getAcquisitionMode());
}
}