// // GZipHandle.java // /* LOCI Common package: utilities for I/O, reflection and miscellaneous tasks. Copyright (C) 2005-@year@ Melissa Linkert, Curtis Rueden and Chris Allan. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA */ package loci.common; import java.io.BufferedInputStream; import java.io.DataInputStream; import java.io.FileInputStream; import java.io.IOException; import java.util.zip.GZIPInputStream; /** * StreamHandle implementation for reading from gzip-compressed files * or byte arrays. Instances of GZipHandle are read-only. * * <dl><dt><b>Source code:</b></dt> * <dd><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/common/src/loci/common/GZipHandle.java">Trac</a>, * <a href="http://git.openmicroscopy.org/?p=bioformats.git;a=blob;f=components/common/src/loci/common/GZipHandle.java;hb=HEAD">Gitweb</a></dd></dl> * * @see StreamHandle * * @author Melissa Linkert melissa at glencoesoftware.com */ public class GZipHandle extends StreamHandle { // -- Constructor -- /** * Construct a new GZipHandle for the given file. * * @throws HandleException if the given file name is not a GZip file. */ public GZipHandle(String file) throws IOException { super(); this.file = file; if (!isGZipFile(file)) { throw new HandleException(file + " is not a gzip file."); } resetStream(); length = 0; while (true) { int skip = stream.skipBytes(1024); if (skip <= 0) break; length += skip; } resetStream(); } // -- GZipHandle API methods -- /** Returns true if the given filename is a gzip file. */ public static boolean isGZipFile(String file) throws IOException { if (!file.toLowerCase().endsWith(".gz")) return false; FileInputStream s = new FileInputStream(file); byte[] b = new byte[2]; s.read(b); s.close(); return DataTools.bytesToInt(b, true) == GZIPInputStream.GZIP_MAGIC; } // -- StreamHandle API methods -- /* @see StreamHandle#resetStream() */ protected void resetStream() throws IOException { if (stream != null) stream.close(); BufferedInputStream bis = new BufferedInputStream( new FileInputStream(file), RandomAccessInputStream.MAX_OVERHEAD); stream = new DataInputStream(new GZIPInputStream(bis)); } }