/*
* ome.xml.model.XMLAnnotation
*
*-----------------------------------------------------------------------------
*
* Copyright (C) @year@ Open Microscopy Environment
* Massachusetts Institute of Technology,
* National Institutes of Health,
* University of Dundee,
* University of Wisconsin-Madison
*
*
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation; either
* version 2.1 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*-----------------------------------------------------------------------------
*/
/*-----------------------------------------------------------------------------
*
* THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
* Created by melissa via xsd-fu on 2011-11-09 10:55:09-0500
*
*-----------------------------------------------------------------------------
*/
package ome.xml.model;
import java.util.ArrayList;
import java.util.List;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import ome.xml.model.enums.*;
import ome.xml.model.primitives.*;
public class XMLAnnotation extends Annotation
{
// Base: Annotation -- Name: XMLAnnotation -- Type: XMLAnnotation -- javaBase: Annotation -- javaType: Object
// -- Constants --
public static final String NAMESPACE = "http://www.openmicroscopy.org/Schemas/SA/2011-06";
/** Logger for this class. */
private static final Logger LOGGER =
LoggerFactory.getLogger(XMLAnnotation.class);
// -- Instance variables --
// Property
private String value;
// -- Constructors --
/** Default constructor. */
public XMLAnnotation()
{
super();
}
/**
* Constructs XMLAnnotation recursively from an XML DOM tree.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public XMLAnnotation(Element element, OMEModel model)
throws EnumerationException
{
update(element, model);
}
// -- Custom content from XMLAnnotation specific template --
// -- OMEModelObject API methods --
/**
* Updates XMLAnnotation recursively from an XML DOM tree. <b>NOTE:</b> No
* properties are removed, only added or updated.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public void update(Element element, OMEModel model)
throws EnumerationException
{
super.update(element, model);
String tagName = element.getTagName();
if (!"XMLAnnotation".equals(tagName))
{
LOGGER.debug("Expecting node name of XMLAnnotation got {}", tagName);
}
// -- BEGIN custom content from Value property template --
List<Element> Value_nodeList =
getChildrenByTagName(element, "Value");
if (Value_nodeList.size() > 1)
{
// TODO: Should be its own Exception
throw new RuntimeException(String.format(
"Value node list size %d != 1",
Value_nodeList.size()));
}
else if (Value_nodeList.size() != 0)
{
// Element property Value which is not complex (has no
// sub-elements)
java.io.StringWriter sw = new java.io.StringWriter();
javax.xml.transform.stream.StreamResult sr =
new javax.xml.transform.stream.StreamResult(sw);
javax.xml.transform.TransformerFactory tf =
javax.xml.transform.TransformerFactory.newInstance();
try
{
javax.xml.transform.Transformer t = tf.newTransformer(
new javax.xml.transform.stream.StreamSource(
this.getClass().getResourceAsStream("StripWhitespace.xsl")));
t.setOutputProperty(
javax.xml.transform.OutputKeys.OMIT_XML_DECLARATION, "yes");
t.setOutputProperty(
javax.xml.transform.OutputKeys.INDENT, "no");
NodeList childNodeList = Value_nodeList.get(0).getChildNodes();
for (int i = 0; i < childNodeList.getLength(); i++)
{
try {
t.transform(new javax.xml.transform.dom.DOMSource(
childNodeList.item(i)), sr);
}
catch (javax.xml.transform.TransformerException te) {
LOGGER.warn("Failed to transform node #" + i, te);
}
}
setValue(sw.toString().trim());
}
catch (Exception e)
{
throw new RuntimeException(e);
}
}
// -- END custom content from Value property template --
}
// -- XMLAnnotation API methods --
public boolean link(Reference reference, OMEModelObject o)
{
boolean wasHandledBySuperClass = super.link(reference, o);
if (wasHandledBySuperClass)
{
return true;
}
LOGGER.debug("Unable to handle reference of type: {}", reference.getClass());
return false;
}
// Property
public String getValue()
{
return value;
}
public void setValue(String value)
{
this.value = value;
}
public Element asXMLElement(Document document)
{
return asXMLElement(document, null);
}
protected Element asXMLElement(Document document, Element XMLAnnotation_element)
{
// Creating XML block for XMLAnnotation
if (XMLAnnotation_element == null)
{
XMLAnnotation_element =
document.createElementNS(NAMESPACE, "XMLAnnotation");
}
if (value != null)
{
// -- BEGIN custom content from Value property template --
Document Value_document = null;
try
{
javax.xml.parsers.DocumentBuilderFactory factory =
javax.xml.parsers.DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(true);
javax.xml.parsers.DocumentBuilder parser =
factory.newDocumentBuilder();
org.xml.sax.InputSource is = new org.xml.sax.InputSource();
is.setCharacterStream(new java.io.StringReader(value));
Value_document = parser.parse(is);
}
catch (Exception e)
{
throw new RuntimeException(e);
}
Element value_element =
document.createElementNS(NAMESPACE, "Value");
NodeList Value_subNodes = Value_document.getChildNodes();
for (int i = 0; i < Value_subNodes.getLength(); i++)
{
Node Value_subNode = Value_subNodes.item(i);
Value_subNode = document.importNode(Value_subNode, true);
value_element.appendChild(Value_subNode);
}
XMLAnnotation_element.appendChild(value_element);
// -- END custom content from Value property template --
}
return super.asXMLElement(document, XMLAnnotation_element);
}
}