// // LociImporter.java // /* LOCI Plugins for ImageJ: a collection of ImageJ plugins including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer. Copyright (C) 2005-@year@ Melissa Linkert, Curtis Rueden and Christopher Peterson. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA */ package loci.plugins; import ij.plugin.PlugIn; import java.util.HashSet; import loci.common.DebugTools; import loci.plugins.in.Importer; import loci.plugins.util.LibraryChecker; /** * ImageJ plugin for reading files using the LOCI Bio-Formats package. * Wraps core logic in {@link loci.plugins.in.Importer}, to avoid * direct references to classes in the external Bio-Formats library. * * <dl><dt><b>Source code:</b></dt> * <dd><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/loci-plugins/src/loci/plugins/LociImporter.java">Trac</a>, * <a href="http://git.openmicroscopy.org/?p=bioformats.git;a=blob;f=components/loci-plugins/src/loci/plugins/LociImporter.java;hb=HEAD">Gitweb</a></dd></dl> * * @author Curtis Rueden ctrueden at wisc.edu * @author Melissa Linkert melissa at glencoesoftware.com */ public class LociImporter implements PlugIn { // -- Fields -- /** * Flag indicating whether last operation was successful. * NB: This field must be updated properly, or the plugin * will stop working correctly with HandleExtraFileTypes. */ public boolean success; /** * Flag indicating whether last operation was canceled. * NB: This field must be updated properly, or the plugin * will stop working correctly with HandleExtraFileTypes. */ public boolean canceled; // -- PlugIn API methods -- /** Executes the plugin. */ public void run(String arg) { DebugTools.enableLogging("INFO"); canceled = false; success = false; if (!LibraryChecker.checkJava() || !LibraryChecker.checkImageJ()) return; HashSet<String> missing = new HashSet<String>(); LibraryChecker.checkLibrary(LibraryChecker.Library.BIO_FORMATS, missing); LibraryChecker.checkLibrary(LibraryChecker.Library.OME_JAVA_XML, missing); LibraryChecker.checkLibrary(LibraryChecker.Library.FORMS, missing); if (!LibraryChecker.checkMissing(missing)) return; new Importer(this).run(arg); } }