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seqcode-master
seqcode-core-master
src
org
seqcode
data
connections
ClobHandler.java
CxnPool.java
DatabaseConnectionManager.java
DatabaseException.java
DatabaseFactory.java
DatabaseSequence.java
MySQLCxnPool.java
OracleCxnPool.java
UnknownRoleException.java
core
AlignType.java
CellLine.java
ExptCondition.java
ExptTarget.java
ExptType.java
Lab.java
MetadataLoader.java
MetadataModifier.java
ReadType.java
SeqDataUser.java
TimePoint.java
TimeSeries.java
TimeSeriesLoader.java
tools
AddChromosomes.java
AddGenome.java
AddSpecies.java
ChromColumn2ID.java
io
BackgroundModelIO.java
DatasetsGeneralIO.java
FASTALoader.java
FASTAWriter.java
IOUtil.java
LineByLineFileReader.java
LineByLineFileWriter.java
Points2RegionsConverter.java
RegionFileUtilities.java
StreamGobbler.java
parsing
BEDLine.java
BEDParser.java
CSVFileParser.java
FASTAStream.java
GFFEntry.java
PWMParser.java
ParseException.java
ParseGFF.java
ParseTextMotifs.java
TranscriptFileExpander.java
affyexpr
AffyExperiment.java
AffyFusionCelReader.java
AffyMeasurement.java
AffyProbe.java
AffyProbeSet.java
motifdb
BackgroundModel.java
BackgroundModelFrequencySupport.java
BackgroundModelLoader.java
BackgroundModelMetadata.java
CountsBackgroundModel.java
DumpMotifs.java
FrequencyBackgroundModel.java
MarkovBackgroundModel.java
WMHit.java
WMHitStartComparator.java
WeightMatrix.java
WeightMatrixImport.java
WeightMatrixLoader.java
WeightMatrixPainter.java
WeightMatrixScan.java
pegr
PughDBLoader.java
PughLabSampleInfo.java
tools
ExportPughDBSampleList.java
readdb
ACLChangeEntry.java
Aggregator.java
AlignmentACL.java
Bits.java
ByteBP.java
CacheGCHook.java
Client.java
ClientException.java
Closeable.java
Dispatch.java
FloatBP.java
Header.java
Hits.java
ImportHitList.java
ImportHits.java
IntBP.java
LRUCache.java
Lock.java
PairedHit.java
PairedHitLeftComparator.java
PairedHitRightComparator.java
PairedHits.java
Query.java
ReadDB.java
ReadOnlyClient.java
Request.java
Resort.java
ReverseByteOrder.java
Server.java
ServerTask.java
SingleHit.java
SingleHits.java
WorkerThread.java
tools
BAMQuery.java
Bowtie2SAMToReadDB.java
BowtieToReadDB.java
PairedSAMToReadDB.java
SAMStats.java
SAMToReadDB.java
TophatSAMToReadDB.java
unittests
TestHits.java
TestNio.java
TestPairedHits.java
TestReadDB.java
seqdata
SeqAlignment.java
SeqAnalysis.java
SeqAnalysisResult.java
SeqAnalysisResultEnrichmentComparator.java
SeqAnalysisResultPvalueComparator.java
SeqDataLoader.java
SeqDataModifier.java
SeqExpt.java
SeqHit.java
SeqHitPair.java
SeqLocator.java
SeqLocatorMatchedAligns.java
tools
AlignmentLookup.java
AnalysisImporter.java
CreateAlignment.java
CreateExpt.java
DeleteAlignment.java
DescribeAlignments.java
DumpAnalysisParameters.java
ExportSeqAlignmentList.java
FindZeroReadAlignments.java
GPSAnalysisImporter.java
GeneBasedBindingReport.java
GeneBasedReport.java
GetAlignmentParameters.java
GetAlignments.java
GetBindingInRegion.java
GuessControlExpt.java
LoadAlignmentsFromFile.java
UpdateAlignmentsFromFile.java
UpdateHitCounts.java
editor
SeqDataEditEntryForm.java
SeqDataExperimentEditor.java
SeqDataExptEditPane.java
SeqExptEditTablePanel.java
SeqExptTableModel.java
deepseq
ExtReadHit.java
HitPair.java
Read.java
ReadHit.java
StrandedBaseCount.java
StrandedBaseCountFilterByBase.java
StrandedPair.java
composite
CompositeTagDistribution.java
events
BindingEvent.java
BindingEventFileReader.java
BindingEventFilter.java
BindingManager.java
BindingModel.java
BindingModelMaker.java
BindingModelPerBase.java
EnrichmentSignificance.java
EventsConfig.java
PointsToEvents.java
experiments
ControlledExperiment.java
ExperimentCondition.java
ExperimentManager.java
ExperimentScaler.java
ExperimentTarget.java
ExperimentType.java
ExptConfig.java
ExptDescriptor.java
HitCache.java
Sample.java
SampleLoader.java
hitloaders
BEDFileHitLoader.java
BowtieFileHitLoader.java
FileHitLoader.java
HitLoader.java
HitLoaderFactory.java
IDXFileHitLoader.java
NovoFileHitLoader.java
ReadDBHitLoader.java
SAMFileHitLoader.java
TophatFileHitLoader.java
stats
BackgroundCollection.java
BackgroundModel.java
PoissonBackgroundModel.java
utils
BEDExporter.java
IDXExporter.java
PairInsertDistribution.java
PointCoverage.java
RegionTagCounts.java
WIGExporter.java
simulation
ChIPReadSimulator.java
CountDataSimulator.java
genome
Genome.java
GenomeConfig.java
Species.java
location
AnnotationLoader.java
ChromosomeInfo.java
CpGIsland.java
ExonicGene.java
Gene.java
Named.java
NamedPoint.java
NamedRegion.java
NamedStrandedRegion.java
NamedTypedRegion.java
Point.java
Region.java
RepeatMaskedRegion.java
Scored.java
ScoredPoint.java
ScoredRegion.java
ScoredStrandedPoint.java
ScoredStrandedRegion.java
Stranded.java
StrandedPoint.java
StrandedRegion.java
Typed.java
sequence
RandomSequenceGenerator.java
ReverseComplement.java
ScoredSequence.java
SequenceGenerator.java
SequenceUtils.java
StringToGCCounts.java
StringToKMers.java
WildcardKmerUtils.java
seqfunctions
BaseFrequencyFunction.java
CatSeqFunctions.java
CompositeSeqFunction.java
CompositeSeqFunctionComparison.java
GCContentFunction.java
GCPresenceFunction.java
HelixTwistStructureFunction.java
MGWStructureFunction.java
MKBaseFrequencyFunction.java
PolyAFunction.java
PropTwistStructureFunction.java
RYBaseFrequencyFunction.java
RollStructureFunction.java
SWBaseFrequencyFunction.java
SeqFunction.java
SeqFunctionException.java
SeqFunctionMask.java
TestSeqFunctions.java
gsebricks
Context.java
GeneFactory.java
GeneFactoryLoader.java
RegionExpanderFactory.java
RegionExpanderFactoryLoader.java
RegionMapperFactory.java
iterators
AppendingIterator.java
BacktrackingIterator.java
CastingIterator.java
CloseableIterator.java
EmptyIterator.java
PermutationIterator.java
SerialIterator.java
SingleIterator.java
SortingIterator.java
types
ClassType.java
CollectionType.java
DefaultConstantsParameterized.java
DependentSelfDescribingVerb.java
EchoType.java
GeneralType.java
PairType.java
SelfDescribingConstant.java
SelfDescribingOutput.java
SelfDescribingParameterized.java
SelfDescribingVerb.java
SequenceType.java
StructuredType.java
ValueWrapper.java
verbs
BiCombiner.java
CastingMapper.java
Combiner.java
CombinerExpander.java
CombinerIterator.java
ConditionalFilter.java
Counter.java
CoveredFilter.java
DefaultToStringMapper.java
DistanceFilter.java
DistanceGenerator.java
Distiller.java
DistillerIterator.java
Expander.java
ExpanderCastWrapper.java
ExpanderIterator.java
ExpanderPairIterator.java
Feature2Region.java
FileLineExpander.java
Filter.java
FilterIterator.java
FilterPairIterator.java
FilterValueMapper.java
FilteredExpander.java
Generator.java
Mapper.java
MapperCastWrapper.java
MapperIterator.java
MapperPairIterator.java
MultiIterator.java
MultiSink.java
PairCombiner.java
ResultSetIterator.java
RunningOverlapSum.java
SetOfExpanders.java
Sink.java
StaticExpander.java
TSVToStringMapper.java
TableXRef.java
TopNMapper.java
Tupler.java
UniqueFilter.java
WeightedRunningOverlapSum.java
assignment
Annotations.java
AssignmentPredicate.java
CachedAnnotations.java
OverlappingRegionExpander.java
RegionAnnotations.java
RegionToRegionAnnotations.java
StandardAssignmentPredicate.java
StandardAssignmentZoneMapper.java
chipseq
GPSParser.java
GPSPeak.java
MACSParser.java
MACSPeakRegion.java
SeqExpander.java
SeqHitExtender.java
location
CDSGeneratorFactory.java
ChromRegionIterator.java
ChromosomeGenerator.java
CpGIslandGenerator.java
CpGIslandGeneratorFactory.java
GeneToPromoter.java
GenomeExpander.java
MultiZGenerator.java
MultiZGeneratorFactory.java
NamedGenerator.java
NamedGeneratorFactory.java
NamedRegionGenerator.java
NamedStrandedGenerator.java
NamedStrandedGeneratorFactory.java
NamedTypedGenerator.java
NamedTypedGeneratorFactory.java
OverlappingRegionCombiner.java
PhastConsGenerator.java
PointParser.java
RandomPointGenerator.java
RefGeneByNameGenerator.java
RefGeneGenerator.java
RefGeneGeneratorFactory.java
RefGeneNoChrGeneratorFactory.java
RefGenePromoterGenerator.java
RefGeneUnion.java
RegionCoverage.java
RegionExpander.java
RegionMatching.java
RegionOverlapSum.java
RegionParser.java
RegionSorter.java
RegionSplitter.java
RepeatMaskedGenerator.java
RepeatMaskedGeneratorFactory.java
SGDOtherGenerator.java
SGDOtherGeneratorFactory.java
ScoredRegionGenerator.java
ScoredRegionGeneratorFactory.java
StrandedDistanceFilter.java
StrandedGeneratorFactory.java
StrandedPointParser.java
StrandedRegionGenerator.java
StrandedRegionParser.java
StrandedToFivePrime.java
StrandedToStart.java
StrandedToThreePrime.java
TiledRegionGenerator.java
UniqueishGeneFilter.java
UniqueishRegionFilter.java
motifs
PerBaseMotifMatch.java
VectorMaximizer.java
WeightMatrixBestHitMapper.java
WeightMatrixExpander.java
WeightMatrixFilter.java
WeightMatrixHit.java
WeightMatrixScoreProfile.java
WeightMatrixScorer.java
gseutils
Accumulator.java
ArgParser.java
Args.java
ArrayUtils.java
BitMasker.java
BitVector.java
Closeable.java
Coverage.java
EventSource.java
Factory.java
Function.java
GenSym.java
Interval.java
Listener.java
MergingIterator.java
NamedValue.java
NotFoundException.java
ObjectChooser.java
OverlapSum.java
PackedBitVector.java
Pair.java
Predicate.java
ROC.java
RealValuedFunction.java
RealValuedHistogram.java
RecurrenceEquation.java
Saveable.java
SetTools.java
ShortBitVector.java
Sorter.java
StringSetDialog.java
UCSCBins.java
UnitCoverage.java
Utils.java
datastructures
BinarySplayTree.java
Heap.java
Taxonomy.java
TaxonomyEvent.java
TaxonomyImpl.java
TaxonomyTreeModel.java
expressions
CompoundExpression.java
Evaluator.java
Expression.java
ExpressionParser.java
LambdaExpression.java
SimpleExpression.java
graphs
AdjacencyMatrix.java
Algorithms.java
CycleChecker.java
DirectedAlgorithms.java
DirectedCycleChecker.java
DirectedGraph.java
DirectedMultiGraph.java
DirectedWeightedGraph.java
Graph.java
GraphModel.java
GraphSearch.java
GraphVisualizer.java
LaplacianMatrix.java
MultiGraph.java
Parser.java
RandomDirectedGraph.java
SearchInterface.java
Test.java
Triangulation.java
UndirectedAlgorithms.java
UndirectedCycleChecker.java
UndirectedGraph.java
VertexSet.java
WeightedAlgorithms.java
WeightedGraph.java
layout
GraphLayout.java
LayeredLayoutEngine.java
LayoutEngine.java
StandardGraphLayout.java
ui
GraphEditor.java
Visualizer.java
json
CDL.java
Cookie.java
CookieList.java
HTTP.java
HTTPTokener.java
JSONArray.java
JSONException.java
JSONML.java
JSONObject.java
JSONString.java
JSONStringer.java
JSONTokener.java
JSONWriter.java
Test.java
XML.java
XMLTokener.java
models
Accessor.java
ArgumentModel.java
Arguments.java
ArrayFieldAccessor.java
FieldAccessor.java
FileTimer.java
IllegalModelException.java
Model.java
ModelFieldAnalysis.java
ModelGraph.java
ModelInput.java
ModelInputIterator.java
ModelListener.java
ModelOutput.java
Modeleable.java
PairModel.java
Timer.java
Timing.java
strings
StringUtils.java
UkkonenSuffixTree.java
multipattern
AhoCorasick.java
DenseEdgeList.java
EdgeList.java
Queue.java
SearchResult.java
Searcher.java
SparseEdgeList.java
State.java
math
diff
CountsDataset.java
CountsDatasetLoader.java
DESeqDifferentialEnrichment.java
DifferentialEnrichment.java
EdgeRDifferentialEnrichment.java
MAval.java
MedianRatiosNormalization.java
Normalization.java
StatsTester.java
TMMNormalization.java
numeric
JamaUtils.java
Numerical.java
probability
BetaFunction.java
ExponentialDistribution.java
FiniteDistribution.java
Gaussian.java
Hypergeometric.java
MannWhitneyEquation.java
NormalDistribution.java
NormalDistributionCalculator.java
NormalDistributionGio.java
Sample.java
randomgenerators
Sampler.java
stats
CubicSpline.java
DirichletFit.java
DoubleSort.java
Fmath.java
InfoTheoryUtil.java
ListUtil.java
Lowess.java
NegativeBinomialDistrib.java
StatUtil.java
StepDownFDR.java
TestStat.java
VectorUtil.java
ml
bayesnets
BN.java
BNCpd.java
BNModelScore.java
BNSearch.java
BNTest.java
BNValues.java
BNValuesIterator.java
BNVar.java
GraphStep.java
GraphStepper.java
NaiveBayes.java
classification
AttributeBagging.java
AttributeRandomTree.java
BaggedRandomForest.java
WekaLogistic.java
WekaNaiveBayes.java
WekaRandomForest.java
WekaWeights.java
clustering
Cluster.java
ClusterRepresentative.java
Clusterable.java
ClusterablePair.java
ClusteringMethod.java
DefaultCluster.java
PairwiseElementMetric.java
SimpleClusterable.java
SingletonCluster.java
affinitypropagation
APCluster.java
CorrelationSimilarity.java
FileSimilarityMeasure.java
SimilarityMeasure.java
hierarchical
ClusterNode.java
HierarchicalClustering.java
kmeans
KMeansClustering.java
som
SOM.java
vectorcluster
ChebyshevDistance.java
DefaultVectorClusterElement.java
ElementParser.java
EuclideanDistance.java
Mean.java
VectorClusterElement.java
hmm
HMM.java
regression
ATransformation.java
DataFrame.java
DataRegression.java
Predicted.java
Predictors.java
RegressionModel.java
Transformation.java
XYPoint.java
wekautils
WekaCSVLoader.java
motifs
CEResult.java
CenterOnMotif.java
ClusterMotifs.java
CombinatorialEnrichment.java
CompareEnrichment.java
ConsensusSequence.java
ConsensusSequenceScoreProfile.java
ConsensusSequenceScorer.java
CountKmers.java
DiscriminativeKmers.java
DrawMotifs.java
FreqMatrixImport.java
MarkovMotifThresholdFinder.java
MemeER.java
MotifAnalysisMultiMotif.java
MotifAnalysisSandbox.java
MotifDensity.java
MotifDistancePlot.java
MotifOccurrenceMatrix.java
MotifOverlapPlot.java
SVMCombinatorial.java
SVMFiles.java
Score2Sp.java
SimilarMotifs.java
WMComparator.java
WMDistanceComparator.java
WMMinAvgDistanceRep.java
WMMinSquaredDistanceRep.java
WMNormalizedDistanceComparator.java
WeightMatrixScanner.java
WeightMatrixSearch.java
projects
galaxyexo
FeatureCountsLoader.java
NucleosomeEnrichmentProfiler.java
PointEnrichmentTester.java
SignificanceTester.java
seed
DomainFinder.java
FeatureDetection.java
PCSPeakFinder.java
PeakFinder.java
SEEDConfig.java
SuperEnhancerFinder.java
features
EnrichedFeature.java
EnrichedPCSPeakFeature.java
EnrichedPeakFeature.java
Feature.java
SuperEnrichedFeature.java
stats
FeatureStatistics.java
seqview
EventHandler.java
RectangleLookup.java
SeqView.java
SeqViewActionEvent.java
SeqViewException.java
SeqViewOptions.java
SeqViewProperties.java
Startable.java
ValueReceiver.java
components
ChipSeqAnalysisFrame.java
ChipSeqAnalysisSelectPanel.java
ChipSeqAnalysisTableModel.java
FileBasedTracksPanel.java
GeneorRegionComparator.java
HashtableConfigurationFrame.java
HashtableConfigurationPanel.java
ImageCachingPanel.java
ListModelAdder.java
MotifDisplayPane.java
MotifScanSelectPanel.java
MotifScanTableModel.java
MotifSelectPanel.java
MotifTableModel.java
MultiModelPrefs.java
NullTreeModel.java
PainterContainer.java
RegionAnnotationPanel.java
RegionList.java
RegionListPanel.java
RegionPanel.java
SaveRegionsAsFasta.java
SeqAlignmentSelectPanel.java
SeqAlignmentTableModel.java
SeqViewOptionsFrame.java
SeqViewOptionsPane.java
SeqViewStatus.java
SeqViewStatusBar.java
SeqViewToolsMenu.java
SequenceViewer.java
Snapshot.java
model
ExpanderModel.java
GeneModel.java
InteractionArcModel.java
InteractionArcModelProperties.java
MapperModel.java
Model.java
ModelChangedEvent.java
ModelProperties.java
MultipleExpanderModel.java
RegionExpanderModel.java
RegionMapperModel.java
RegionModel.java
RegionMultipleExpanderModel.java
SeqAnalysisModel.java
SeqAnalysisProperties.java
SeqDataModel.java
SeqDataProperties.java
SeqHistogramModel.java
SeqHistogramModelProperties.java
SeqPairedEndModel.java
SeqPairedEndModelProperties.java
SeqScaleModel.java
SeqViewModel.java
paintable
BasePairPainter.java
BasePairPainterProperties.java
CDSGenePainter.java
CpGPainter.java
CpGProperties.java
ExonGenePainter.java
ExperimentPaintableProperties.java
FixedWidthHashPaintable.java
GCContentPainter.java
GCContentProperties.java
GenePainter.java
GeneProperties.java
HashMarkPaintable.java
HeightScoredPainter.java
HeightScoredProperties.java
InteractionArcPainter.java
InteractionArcProperties.java
MotifScanPainter.java
MotifScanProperties.java
MultiGenePainter.java
NamedStrandedPainter.java
NamedStrandedProperties.java
NamedTypedPainter.java
NonOverlappingLayout.java
PaintableProperties.java
PairedEndPainter.java
PairedEndProperties.java
PerBaseScorePainter.java
PerBaseScoreProperties.java
RegexMatchPainter.java
RegexMatchProperties.java
RegionPaintable.java
SeqAboveBelowStrandPainter.java
SeqAnalysisPainter.java
SeqAnalysisProperties.java
SeqBasicOverlapPainter.java
SeqCombinedPainter.java
SeqDataBatchProperties.java
SeqHistogramPainter.java
SeqHistogramProperties.java
SeqPainter.java
SeqProperties.java
SeqViewPaintable.java
ShadedScoredPainter.java
VizPaintable.java
tools
location
DumpGeneGFF.java
RandomRegions.java
RegionListOverlap.java
sequence
CompareKmers.java
GenbankToFasta.java
GeneORFs.java
GenePromoters.java
RandomReadGenerator.java
RegionsToFasta.java
StrandedRegionsToFasta.java
UShuffle.java
tutorials
SeqExperimentLoadingExample.java
viz
AttributeCalculator.java
DynamicAttribute.java
charting
HistogramDataset.java
colors
ColorRange.java
ColorSet.java
Coloring.java
components
GenericEditTablePanel.java
GenericSelectPanel.java
ImageConfigurationFrame.java
ObjectTableModel.java
RegexFileFilter.java
SelectionEvent.java
SelectionListener.java
compositeplot
MakeTagProfile.java
SequenceAlignmentFigure.java
TagProfile.java
TagProfilePaintable.java
eye
AbstractModelPaintable.java
ContainerModelPaintable.java
LocatedValueModel.java
ModelBarChart.java
ModelHistogram.java
ModelLineGraph.java
ModelLocatedDifferenceValues.java
ModelLocatedValues.java
ModelMultiplexer.java
ModelPaintable.java
ModelPaintableProperty.java
ModelPaintablePropertyListener.java
ModelPaintableWrapper.java
ModelPrefs.java
ModelRangeValues.java
ModelScatter.java
ModelScatterHistograms.java
ModelWeightedRangeValues.java
OverlayModelPaintable.java
PrefsPanel.java
PropertyValueWrapper.java
SubPropertyWrapper.java
TimingVizFrame.java
genomicplot
ChipSeqFigureMaker.java
ChipSeqFigurePaintable.java
DiffSeqExptPaintable.java
ExpressionPainter.java
FigureOptions.java
FigurePaintable.java
MultidataSpatialPaintable.java
MultidataSpatialSetup.java
RNASeqFigureMaker.java
RNASeqFigurePaintable.java
ThinOverlapPaintable.java
graphs
DirectedGraphAdapter.java
EdgeView.java
GraphPaintable.java
GraphView.java
InteractiveGraphPanel.java
NodeView.java
ObjectView.java
SubEdgeView.java
TextView.java
UndirectedGraphAdapter.java
View.java
html
HTMLAnchor.java
HTMLBreak.java
HTMLElmt.java
HTMLList.java
HTMLPage.java
HTMLSequence.java
HTMLTable.java
HTMLText.java
metaprofile
BinningParameters.java
ChipSeqProfiler.java
ConsensusMetaMaker.java
ConsensusProfiler.java
EventMetaMaker.java
EventProfiler.java
FauxGenePaintable.java
MetaConfig.java
MetaMaker.java
MetaProfile.java
MetaProfileHandler.java
MetaUtils.java
MotifMetaMaker.java
MotifProfiler.java
NormalizedMetaProfile.java
PairedSeqMidpointProfiler.java
PointProfile.java
PointProfiler.java
Profile.java
ProfileClusterable.java
ProfileClusteringHandler.java
ProfileEvent.java
ProfileLinePaintable.java
ProfileListener.java
ProfilePaintable.java
SequenceAlignmentFigure.java
Stranded5PrimeProfiler.java
swing
MetaFrame.java
MetaNonFrame.java
MetaNonFrameMultiSet.java
MultiProfilePanel.java
OptionsFrame.java
ProfileLinePanel.java
ProfilePanel.java
paintable
AbstractPaintable.java
ArrowPainter.java
BackgroundPaintable.java
BorderPaintable.java
BoxAndWhiskersPlot.java
DirectedTagPainter.java
DoubleBufferedPaintable.java
FixedPaintable.java
HorizontalLadderScalePainter.java
HorizontalScalePainter.java
Paintable.java
PaintableChangedEvent.java
PaintableChangedListener.java
PaintableFrame.java
PaintablePanel.java
PaintableScale.java
PaintableScaleChangedEvent.java
PaintableScaleListener.java
RotatingPaintable.java
ScatterPlot.java
VerticalScalePainter.java
layout
CornerRotatingPaintable.java
InsetPaintable.java
LayeredPaintable.java
ScaledPaintable.java
StackedPaintable.java
preferences
FileSelectPanel.java
PreferencesDialog.java
PreferencesEvent.java
PreferencesListener.java
PreferencesModel.java
PreferencesTest.java
scatter
Dataset2D.java
ScatterData.java
ScatterPanel.java
ScatterPlot.java
ScatterPlotConfigured.java
ScatterPlotMaker.java
ScatterPlotter.java
utils
AddableNamedList.java
FileChooser.java
GenomeSelectPanel.java
GifSequenceWriter.java
ListPanel.java
ListPanelEvent.java
ListPanelEventSource.java
ListPanelListener.java
MessageFrame.java
NamedListPanel.java
PanelFrame.java
ProgressEvent.java
ProgressListener.java
ProgressPanel.java
SelectableTable.java
SelectableTableModel.java
SelectionDialog.java
SelectionEvent.java
SelectionPanel.java
SimpleListPanel.java
TextLayout.java
URLDisplayPanel.java
package org.seqcode.genome.location; public interface Named { public String getName(); }