// HandleSet.java // (C) 2009 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany // first published 10.03.2009 on http://www.anomic.de // // $LastChangedDate$ // $LastChangedRevision$ // $LastChangedBy$ // // LICENSE // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA package net.yacy.kelondro.index; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.File; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStream; import java.io.ObjectInputStream; import java.io.ObjectOutputStream; import java.io.OutputStream; import java.io.Serializable; import java.util.Iterator; import java.util.Set; import net.yacy.cora.document.encoding.UTF8; import net.yacy.cora.order.ByteOrder; import net.yacy.cora.order.CloneableIterator; import net.yacy.cora.order.NaturalOrder; import net.yacy.cora.storage.HandleSet; import net.yacy.cora.util.ConcurrentLog; import net.yacy.cora.util.SpaceExceededException; import net.yacy.kelondro.util.SetTools; public final class RowHandleSet implements HandleSet, Iterable<byte[]>, Cloneable, Serializable { private static final long serialVersionUID=444204785291174968L; private final Row rowdef; private RowSet index; public RowHandleSet(final int keylength, final ByteOrder objectOrder, final int expectedspace) { this.rowdef = new Row(new Column[]{new Column("key", Column.celltype_binary, Column.encoder_bytes, keylength, "key")}, objectOrder); try { this.index = new RowSet(this.rowdef, expectedspace); } catch (final SpaceExceededException e) { try { this.index = new RowSet(this.rowdef, 0); } catch (final SpaceExceededException ee) { ConcurrentLog.logException(ee); this.index = null; } } } private RowHandleSet(Row rowdef, RowSet index) { this.rowdef = rowdef; this.index = index; } public RowHandleSet(Row rowdef, byte[] b) throws SpaceExceededException { this.rowdef = rowdef; this.index = RowSet.importRowSet(b, this.rowdef); } @Override public RowHandleSet clone() { optimize(); return new RowHandleSet(this.rowdef, this.index.clone()); } @Override public byte[] export() { return this.index.exportCollection(); } @Override public void optimize() { this.index.sort(); this.index.trim(); } /** * initialize a HandleSet with the content of a dump * @param keylength * @param objectOrder * @param file * @throws IOException * @throws SpaceExceededException */ public RowHandleSet(final int keylength, final ByteOrder objectOrder, final File file) throws IOException, SpaceExceededException { this(keylength, objectOrder, (int) (file.length() / (keylength + 8))); // read the index dump and fill the index final InputStream is = new BufferedInputStream(new FileInputStream(file), 1024 * 1024); final byte[] a = new byte[keylength]; int c; while (true) { c = is.read(a); if (c <= 0) break; this.index.addUnique(this.rowdef.newEntry(a)); } is.close(); assert this.index.size() == file.length() / keylength; } /** * write a dump of the set to a file. All entries are written in order * which makes it possible to read them again in a fast way * @param file * @return the number of written entries * @throws IOException */ @Override public final int dump(final File file) throws IOException { // we must use an iterator from the combined index, because we need the entries sorted // otherwise we could just write the byte[] from the in kelondroRowSet which would make // everything much faster, but this is not an option here. final Iterator<Row.Entry> i = this.index.rows(true, null); OutputStream os; try { os = new BufferedOutputStream(new FileOutputStream(file), 1024 * 1024); } catch (final OutOfMemoryError e) { os = new FileOutputStream(file); } int c = 0; while (i.hasNext()) { os.write(i.next().bytes()); c++; } os.flush(); os.close(); return c; } @Override public final synchronized byte[] smallestKey() { return this.index.smallestKey(); } @Override public final synchronized byte[] largestKey() { return this.index.largestKey(); } @Override public ByteOrder comparator() { return this.rowdef.objectOrder; } public final Row row() { return this.index.row(); } @Override public int keylen() { return this.index.rowdef.primaryKeyLength; } @Override public final void clear() { this.index.clear(); } @Override public final synchronized boolean has(final byte[] key) { assert (key != null); return this.index.has(key); } @Override public final void putAll(final HandleSet aset) throws SpaceExceededException { for (byte[] b: aset) put(b); } /** * Adds the key to the set * @param key * @return true if this set did _not_ already contain the given key. * @throws IOException * @throws SpaceExceededException */ @Override public final boolean put(final byte[] key) throws SpaceExceededException { assert (key != null); final Row.Entry newentry = this.index.row().newEntry(key); return this.index.put(newentry); } @Override public final void putUnique(final byte[] key) throws SpaceExceededException { assert (key != null); final Row.Entry newentry = this.index.row().newEntry(key); this.index.addUnique(newentry); } @Override public final boolean remove(final byte[] key) { assert (key != null); Row.Entry indexentry; indexentry = this.index.remove(key); return indexentry != null; } @Override public final synchronized byte[] removeOne() { Row.Entry indexentry; indexentry = this.index.removeOne(); if (indexentry == null) return null; return indexentry.getPrimaryKeyBytes(); } /** * get one entry; objects are taken from the end of the list * a getOne(0) would return the same object as removeOne() would remove * @param idx * @return entry from the end of the list */ @Override public final synchronized byte[] getOne(int idx) { if (idx >= this.size()) return null; Row.Entry indexentry; indexentry = this.index.get(this.size() - 1 - idx, true); if (indexentry == null) return null; return indexentry.getPrimaryKeyBytes(); } @Override public final synchronized boolean isEmpty() { return this.index.isEmpty(); } @Override public final synchronized int size() { return this.index.size(); } @Override public final synchronized CloneableIterator<byte[]> keys(final boolean up, final byte[] firstKey) { return this.index.keys(up, firstKey); } @Override public final Iterator<byte[]> iterator() { return keys(true, null); } @Override public final synchronized void close() { this.index.close(); this.index = null; } @Override public final String toString() { return this.index.toString(); } // set tools public HandleSet joinConstructive(final HandleSet other) throws SpaceExceededException { return joinConstructive(this, other); } // now the same for set-set public static HandleSet joinConstructive(final HandleSet set1, final HandleSet set2) throws SpaceExceededException { // comparators must be equal if ((set1 == null) || (set2 == null)) return null; assert set1.comparator() == set2.comparator(); if (set1.comparator() != set2.comparator()) return null; if (set1.isEmpty() || set2.isEmpty()) return new RowHandleSet(set1.keylen(), set1.comparator(), 0); // decide which method to use final int high = ((set1.size() > set2.size()) ? set1.size() : set2.size()); final int low = ((set1.size() > set2.size()) ? set2.size() : set1.size()); final int stepsEnum = 10 * (high + low - 1); final int stepsTest = 12 * SetTools.log2a(high) * low; // start most efficient method if (stepsEnum > stepsTest) { if (set1.size() < set2.size()) return joinConstructiveByTest(set1, set2); return joinConstructiveByTest(set2, set1); } return joinConstructiveByEnumeration(set1, set2); } private static HandleSet joinConstructiveByTest(final HandleSet small, final HandleSet large) throws SpaceExceededException { final Iterator<byte[]> mi = small.iterator(); final HandleSet result = new RowHandleSet(small.keylen(), small.comparator(), 0); byte[] o; while (mi.hasNext()) { o = mi.next(); if (large.has(o)) result.put(o); } result.optimize(); return result; } private static HandleSet joinConstructiveByEnumeration(final HandleSet set1, final HandleSet set2) throws SpaceExceededException { // implement pairwise enumeration final ByteOrder comp = set1.comparator(); final Iterator<byte[]> mi = set1.iterator(); final Iterator<byte[]> si = set2.iterator(); final HandleSet result = new RowHandleSet(set1.keylen(), comp, 0); int c; if (mi.hasNext() && si.hasNext()) { byte[] mobj = mi.next(); byte[] sobj = si.next(); while (true) { c = comp.compare(mobj, sobj); if (c < 0) { if (mi.hasNext()) mobj = mi.next(); else break; } else if (c > 0) { if (si.hasNext()) sobj = si.next(); else break; } else { result.put(mobj); if (mi.hasNext()) mobj = mi.next(); else break; if (si.hasNext()) sobj = si.next(); else break; } } } result.optimize(); return result; } @Override public void excludeDestructive (final Set<byte[]> other) { if (other == null) return; if (other.isEmpty()) return; if (other.size() > this.size()) { for (byte[] b: this) {if (other.contains(b)) this.remove(b);} } else { for (byte[] b: other) {this.remove(b) ;} } } /* not used 2013-06-06 private static void excludeDestructive(final HandleSet set1, final HandleSet set2) { if (set1 == null) return; if (set2 == null) return; assert set1.comparator() == set2.comparator(); if (set1.isEmpty() || set2.isEmpty()) return; if (set1.size() < set2.size()) excludeDestructiveByTestSmallInLarge(set1, set2); else excludeDestructiveByTestLargeInSmall(set1, set2); } private static void excludeDestructiveByTestSmallInLarge(final HandleSet small, final HandleSet large) { final Iterator<byte[]> mi = small.iterator(); while (mi.hasNext()) if (large.has(mi.next())) mi.remove(); } private static void excludeDestructiveByTestLargeInSmall(final HandleSet large, final HandleSet small) { final Iterator<byte[]> si = small.iterator(); while (si.hasNext()) large.remove(si.next()); } */ public static void main(String[] args) { HandleSet s = new RowHandleSet(8, NaturalOrder.naturalOrder, 100); try { s.put(UTF8.getBytes("Hello")); s.put(UTF8.getBytes("World")); // test Serializable try { // write to file File f = File.createTempFile("HandleSet", "stream"); ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(f)); out.writeObject(s); out.close(); // read from file ObjectInputStream in = new ObjectInputStream(new FileInputStream(f)); RowHandleSet s1 = (RowHandleSet) in.readObject(); in.close(); for (byte[] b: s1) { System.out.println(UTF8.String(b)); } s1.close(); } catch(IOException e) { e.printStackTrace(); } catch (final ClassNotFoundException e) { e.printStackTrace(); } } catch (final SpaceExceededException e) { e.printStackTrace(); } s.close(); ConcurrentLog.shutdown(); } }