ReferenceManagerAdapter.java

/**
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership.
 *
 * This is free software; you can redistribute it and/or modify it
 * under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2.1 of
 * the License, or (at your option) any later version.
 *
 * This software is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this software; if not, write to the Free
 * Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
 * 02110-1301 USA, or see the FSF site: http://www.fsf.org.
 */
package org.ut.biolab.medsavant.shared.serverapi;

import java.rmi.Remote;
import java.rmi.RemoteException;
import java.sql.SQLException;
import org.ut.biolab.medsavant.shared.model.Chromosome;
import org.ut.biolab.medsavant.shared.model.Reference;
import org.ut.biolab.medsavant.shared.model.SessionExpiredException;



/**
 * Remote class which manages the reference and its associated sequence, chromosome, and gene information.
 *
 * @author mfiume
 */
public interface ReferenceManagerAdapter extends Remote {

    public Reference[] getReferences(String sessID) throws SQLException, RemoteException, SessionExpiredException;

    public String[] getReferenceNames(String sessID) throws SQLException, RemoteException, SessionExpiredException;

    public int getReferenceID(String sessID, String refName) throws SQLException, RemoteException, SessionExpiredException;

    public boolean containsReference(String sessID, String name) throws SQLException, RemoteException, SessionExpiredException;

    public int addReference(String sessID, String name, Chromosome[] chroms, String url) throws SQLException, RemoteException, SessionExpiredException;

    public boolean removeReference(String sessID, int refid) throws SQLException, RemoteException, SessionExpiredException;

    public String getReferenceUrl(String sessID, int refID) throws SQLException, RemoteException, SessionExpiredException;

    public Chromosome[] getChromosomes(String sessID, int refID) throws SQLException, RemoteException, SessionExpiredException;
}