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medsavant-master
MedSavantCLIClient
src
main
java
org
ut
biolab
medsavant
client
cli
Cli.java
MedSavantClient
src
main
java
eu
hansolo
custom
SteelCheckBox.java
SteelCheckBoxUI.java
tools
ColorDef.java
ConicalGradientPaint.java
org
broad
tabix
TabixReader.java
TabixWriter.java
ut
biolab
medsavant
MedSavantClient.java
client
annotation
InstallAnnotationWizard.java
api
FilterStateAdapter.java
Listener.java
app
AppInfo.java
AppInstallUtils.java
AppStorePage.java
AppStoreView.java
MedSavantAppFetcher.java
MedSavantAppInstaller.java
api
AppInfoFetcher.java
AppInstaller.java
AppNotInitializedException.java
AppRoleManagerBuilder.java
component
FlowView.java
RoundedJPanel.java
jAppStore.java
page
AppInfoFlowView.java
AppInfoModal.java
AppInstallInstalledView.java
AppInstallProgressView.java
AppStoreInstalledPage.java
AppStoreLandingPage.java
InstallActionListener.java
appapi
MedSavantVariantSearchApp.java
clinic
ClinicGalleryView.java
ClinicSection.java
GalleryItem.java
GalleryView.java
cohort
CohortDetailedListEditor.java
CohortDetailedView.java
CohortFilterView.java
CohortWizard.java
CohortsPage.java
controller
AnalyticsController.java
ExternalAnnotationController.java
ResultController.java
ServerController.java
SettingsController.java
filter
BooleanFilterView.java
Filter.java
FilterController.java
FilterEffectivenessPanel.java
FilterEvent.java
FilterHistoryPanel.java
FilterHolder.java
FilterState.java
FilterView.java
NumericFilterView.java
QueryPanel.java
SavedFiltersPanel.java
SearchBar.java
StringListFilterView.java
TabularFilterView.java
TagFilterView.java
WhichTable.java
geneset
GeneSetController.java
GeneSetPage.java
importing
ImportFilePanel.java
ImportFileView.java
model
RangeSet.java
ontology
OntologyDetailedListEditor.java
OntologyDetailedView.java
OntologyFilter.java
OntologyFilterView.java
OntologyListItem.java
OntologyPage.java
OntologyWizard.java
patient
AddPatientsForm.java
EditablePatientField.java
IndividualDetailEditor.java
IndividualDetailedView.java
IndividualListModel.java
IndividualsPage.java
Patient.java
PatientFormController.java
PatientUtils.java
PatientView.java
pedigree
NameSymbol.java
PedVizExample.java
PedigreeBasicRule.java
PedigreeCanvas.java
PedigreeFields.java
PedigreeWorker.java
plugin
AppController.java
AppDescriptor.java
PluginBrowser.java
PluginEvent.java
PluginIndex.java
PluginManagerDialog.java
PluginRepositoryDialog.java
PluginVersionException.java
project
ProjectChooser.java
ProjectController.java
ProjectEvent.java
ProjectManagementPage.java
ProjectSummaryPage.java
ProjectWizard.java
ProjectsSection.java
query
ConditionViewGenerator.java
QueryConditionDialog.java
QueryViewController.java
SearchConditionGroupItem.java
SearchConditionItem.java
condition
ConditionSerializer.java
StringConditionSerializer.java
medsavant
MedSavantConditionViewGenerator.java
MedSavantDatabaseNumberConditionValueGenerator.java
MedSavantDatabaseStringConditionValueGenerator.java
complex
CohortConditionGenerator.java
ComprehensiveConditionGenerator.java
ConditionUtils.java
GenesConditionGenerator.java
OntologyConditionGenerator.java
PatientConditionGenerator.java
RegionSetConditionGenerator.java
TagConditionGenerator.java
VariantConditionGenerator.java
value
DatabaseConditionGenerator.java
NumberConditionValueGenerator.java
StringConditionValueGenerator.java
encode
NumericConditionEncoder.java
StringConditionEncoder.java
view
ConditionEditorDialogGenerator.java
ConditionPopupGenerator.java
GeneSearchConditionEditorView.java
JScrollMenu.java
JScrollPopupMenu.java
NumberSearchConditionEditorView.java
PillView.java
ScrollableJPopupMenu.java
SearchConditionEditorView.java
SearchConditionItemView.java
SearchConditionPanel.java
StringSearchConditionEditorView.java
reference
NewReferenceDialog.java
ReferenceController.java
ReferenceEvent.java
ReferenceGenomePage.java
region
AdHocRegionSet.java
RegionController.java
RegionDetailedListEditor.java
RegionDetailedView.java
RegionEvent.java
RegionPage.java
RegionSetFilter.java
RegionSetFilterView.java
RegionWizard.java
settings
BrowserSettings.java
DirectorySettings.java
user
CreateUserDialog.java
NewUserDialog.java
UserController.java
UserEvent.java
UserManagementPage.java
util
CacheController.java
ClientMiscUtils.java
ClientNetworkUtils.java
Controller.java
CryptoUtils.java
CustomFieldConstraint.java
DataRetriever.java
DownloadEvent.java
DownloadMonitor.java
EnumConstraint.java
ExportTable.java
ExportVCF.java
FormController.java
GeneFetcher.java
GeneTable.java
Mail.java
MedSavantExceptionHandler.java
MedSavantWorker.java
ProjectWorker.java
RegexpConstraint.java
ServerModificationInvocationHandler.java
ThreadController.java
VisibleMedSavantWorker.java
variant
ExportVCFWizard.java
ImportVariantsWizardWithAnnotation.java
PublicationWorker.java
RemoveVariantsWizard.java
UpdateWorker.java
VariantFilesDetailedListEditor.java
VariantFilesDetailedView.java
VariantFilesPage.java
VariantWorker.java
view
MedSavantFrame.java
animation
AnimatablePanel.java
Animation.java
IconTranslatorAnimation.java
NotificationAnimation.java
app
AccountManagerApp.java
AppDirectory.java
AppStoreApp.java
AppSubSection.java
DashboardSectionFactory.java
FileDrop.java
MultiSectionApp.java
MultiStepProgressPanel.java
VCFUploadApp.java
builtin
PhenotipsApp.java
RegionsApp.java
SavantApp.java
VariantNavigatorApp.java
patients
PatientsApp.java
settings
AddRemoveDatabaseDialog.java
AnnotationsPage.java
PluginPage.java
ServerLogPage.java
SettingsApp.java
task
BackgroundTaskWorker.java
ServerJobMonitorTaskWorker.java
ServerLogTaskWorker.java
TaskManagerApp.java
TaskWorker.java
component
AlphaImageIcon.java
BlockingPanel.java
CollapsiblePanel.java
ColumnChooser.java
DecimalRangeSlider.java
DocumentViewer.java
FontsMain.java
GeneSelectionPanel.java
GenericStringChooser.java
GenericTableModel.java
HeroPanel.java
HoverButton.java
KeyValuePairPanel.java
LayeredPaneDemo.java
LazyPanel.java
LinkButton.java
ListViewTablePanel.java
MSTabbedPaneUI.java
MSTabbedPaneUI2.java
MSTabbedPaneUI3.java
MSTabbedPaneUI4.java
MSTabbedPaneUI5.java
NiceMenu.java
PartSelectorPanel.java
PathField.java
PlaceHolderPasswordField.java
PlaceHolderTextField.java
ProgressPanel.java
ProgressWheel.java
RoundedPanel.java
RoundedShadowPanel.java
SearchableTablePanel.java
SelectableListView.java
ShadowLabel.java
SplitScreenPanel.java
StackableJPanel.java
StackableJPanelContainer.java
StackableJPanelFactory.java
StripySortableTreeTableModel.java
StripyTable.java
TiledJPanel.java
WaitPanel.java
WrapLayout.java
dashboard
AppSwitchPanel.java
Dashboard.java
DashboardSection.java
LaunchHistory.java
LaunchableApp.java
dialog
AddAnnotationDialog.java
BugReport.java
BugReportDialog.java
CancellableProgressDialog.java
ChangePasswordDialog.java
ComboForm.java
ConfirmDialog.java
DownloadDialog.java
FamilySelector.java
FeedbackDialog.java
FormEditorDialog.java
IndividualSelector.java
ProgressDialog.java
SavantExportForm.java
font
FontFactory.java
genetics
AnalyticsPage.java
ChromosomeDiagramPanel.java
ChromosomePanel.java
GeneticsChartPage.java
GeneticsFilterPage.java
GenomeContainer.java
LogTransform.java
QueryUtils.java
RangeAnnotation.java
SpreadsheetPage.java
TablePanel.java
charts
ArcSegment.java
ChartFrequencyMap.java
ChartMapGenerator.java
ChartView.java
FrequencyEntry.java
Ring.java
RingChart.java
SummaryChart.java
VariantFieldChartMapGenerator.java
inspector
CollapsibleInspector.java
ComprehensiveInspector.java
Inspector.java
SubInspector.java
stat
StaticGeneInspector.java
StaticInspectorPanel.java
StaticVariantInspector.java
variantinfo
BasicGeneSubInspector.java
BasicVariantSubInspector.java
ClinvarSubInspector.java
DetailedVariantSubInspector.java
DownloadTask.java
EntrezButton.java
FileDownloadPanel.java
GeneManiaSettingsDialog.java
GeneManiaSettingsSubPanel.java
GeneManiaSubInspector.java
GeneSetFetcher.java
GeneSubInspector.java
GenemaniaInfoRetriever.java
HGMDSubInspector.java
OntologySubInspector.java
OtherIndividualsGeneSubInspector.java
OtherIndividualsSubInspector.java
OtherIndividualsTableModel.java
OtherIndividualsVariantSubInspector.java
SearchSubInspector.java
Searcher.java
SimpleVariant.java
SimpleVariantSubInspector.java
SocialVariantSubInspector.java
VariantFrequencyAggregatePane.java
images
IconFactory.java
ImagePanel.java
list
CustomColorScheme.java
DetailedListEditor.java
DetailedListModel.java
DetailedTableView.java
DetailedView.java
ListView.java
RowSelectionGrabber.java
SimpleDetailedListModel.java
SplitScreenView.java
login
LoginController.java
LoginEvent.java
MedSavantServerInfo.java
ServerDetailedListEditor.java
ServerDetailedView.java
SplashFrame.java
SplashLoginComponent.java
SplashServerManagementComponent.java
notify
Notification.java
NotificationsPanel.java
util
ColorScheme.java
DefaultColorScheme.java
DialogUtils.java
FixedLengthTextFilter.java
NavigationPanel.java
PathField.java
PeekingPanel.java
PeekingPanelContainer.java
SpringUtilities.java
StandardAppContainer.java
StandardFixableWidthAppPanel.java
TreeBrowserEntry.java
TreeBrowserModel.java
VerticalLabelUI.java
ViewUtil.java
WrapLayout.java
form
NiceForm.java
NiceFormField.java
NiceFormFieldGroup.java
NiceFormModel.java
list
DarkNiceListColorScheme.java
GrayscaleNiceListColorScheme.java
NiceList.java
NiceListColorScheme.java
NiceListItem.java
SubtleBlueNiceListColorScheme.java
WhiteNiceListColorScheme.java
iCloudNiceListColorScheme.java
variants
BrowserPage.java
MedSavantDataSource.java
MergedMedSavantVariantRecord.java
pedviz
view
Symbol2D.java
MedSavantJSONClient
src
main
java
org
ut
biolab
medsavant
BlockingQueueManager.java
JSONUtilities.java
JSONUtilitiesAdapter.java
JSONVariants.java
MedSavantServlet.java
MethodInvocation.java
Session.java
SimplifiedCondition.java
MedSavantPlugins
medsavant-app-google
src
main
java
com
google
api
services
genomics
Genomics.java
GenomicsRequest.java
GenomicsRequestInitializer.java
GenomicsScopes.java
model
Dataset.java
Header.java
HeaderSection.java
ImportReadsetsRequest.java
ImportReadsetsResponse.java
Job.java
ListDatasetsResponse.java
Program.java
Read.java
ReadGroup.java
Readset.java
ReferenceSequence.java
SearchReadsRequest.java
SearchReadsResponse.java
SearchReadsetsRequest.java
SearchReadsetsResponse.java
org
ut
biolab
medsavant
app
google
GoogleGenomicsApp.java
MedSavantPromptReceiver.java
ReadsView.java
original
CommandLine.java
GenomicsSample.java
GoogleAuthenticate.java
GoogleBAMDataSource.java
GoogleReadSearch.java
medsavant.cancer
src
main
java
medsavant
uhn
cancer
AddNewCommentDialog.java
SetCommentStatusDialog.java
StatusIconPanel.java
ToggleableIcon.java
UserCommentApp.java
medsavant.demo
src
medsavant
demo
DemoPlugin.java
medsavant.discovery
src
main
java
medsavant
discovery
DiscoveryApp.java
DiscoveryFindings.java
DiscoveryPanel.java
FilterDetails.java
GenePanel.java
VariantSummaryPanel.java
localDB
DiscoveryDB.java
DiscoveryDBFunctions.java
DiscoveryHSQLServer.java
utils
CSVLoader
CSVLoader.java
DateUtil.java
medsavant.enrichment
src
medsavant
enrichment
EnrichmentApp.java
app
AggregatePage.java
AggregatePanel.java
AggregatePanelGenerator.java
AggregatesStatsPanel.java
CohortAggregatePanel.java
EnrichmentPanel.java
FamilyAggregatePanel.java
OntologyAggregatePanel.java
RegionListAggregatePanel.java
medsavant.incidental
src
CSVLoader
CSVLoader.java
DateUtil.java
medsavant
incidental
IncidentalApp.java
IncidentalFindings.java
IncidentalPanel.java
localDB
IncidentalDB.java
IncidentalHSQLServer.java
medsavant.inspect
src
medsavant
inspect
ExampleInspectorApp.java
ExampleVariantInspector.java
medsavant.mendel-clinic
src
main
java
org
ut
biolab
medsavant
app
mendelclinic
MendelClinicApp.java
controller
MendelWorker.java
model
Locks.java
MendelGene.java
MendelVariant.java
view
MendelPanel.java
OptionView.java
medsavant.pathways
src
medsavant
pathways
PathwaysApp.java
PathwaysPanel.java
medsavant.phenotips
src
medsavant
phenotips
PhenotipsApp.java
medsavant.pubmed
src
medsavant
pubmed
PubMedInspectorApp.java
PubMedVariantInspector.java
medsavant.search
src
medsavant
search
ExampleSearchApp.java
ExampleSearchConditionEditorView.java
ExampleSearchConditionGenerator.java
medsavant.secondary
src
main
java
CSVLoader
CSVLoader.java
DateUtil.java
medsavant
secondary
SecondaryApp.java
SecondaryFindings.java
SecondaryPanel.java
localDB
DiscoveryDB.java
DiscoveryDBFunctions.java
DiscoveryHSQLServer.java
medsavant.variantannotation
src
medsavant
variantannotation
VCFAnnotationWizard.java
VariantAnnotationApp.java
medsavant.wikipathways
src
medsavant
wikipathways
WikiPathwaysApp.java
WikiPathwaysConditionGenerator.java
WikiPathwaysSearchConditionEditor.java
app
DataNode.java
FilterInstance.java
Gene.java
Loader.java
PathwaysBrowser.java
PathwaysPlugin.java
PathwaysTab.java
Viewer.java
MedSavantServerEngine
src
main
java
org
broad
tabix
TabixReader.java
TabixWriter.java
ut
biolab
medsavant
server
IOJob.java
MedSavantIOController.java
MedSavantServerEngine.java
MedSavantServerJob.java
MedSavantServerUnicastRemoteObject.java
db
ConnectionController.java
ConnectionPool.java
LockController.java
MedSavantDatabase.java
PooledConnection.java
admin
SetupMedSavantDatabase.java
TabixTableLoader.java
util
CustomTables.java
DBSettings.java
DBUtils.java
DistinctValuesCache.java
TabixTableLoader.java
variants
ImportUpdateManager.java
Jannovar.java
TSVFile.java
VariantAnnotator.java
VariantManagerUtils.java
VariantParser.java
annotation
AnnotationCursor.java
BatchVariantAnnotator.java
log
BriefLogFormatter.java
EmailLogger.java
mail
CryptoUtils.java
Mail.java
ontology
OBOParser.java
OntologyManager.java
phasing
BEAGLEWrapper.java
serverapi
AnnotationLogManager.java
AnnotationManager.java
CohortManager.java
GeneSetManager.java
LogManager.java
NetworkManager.java
NotificationManager.java
PatientManager.java
ProjectManager.java
ReferenceManager.java
RegionSetManager.java
SessionManager.java
SettingsManager.java
UserManager.java
VariantManager.java
vcf
VCFHeader.java
VCFParser.java
VCFProperty.java
test
java
org
ut
biolab
medsavant
server
db
LockControllerTest.java
MedSavantShared
src
main
java
com
healthmarketscience
sqlbuilder
AliasedObject.java
AllTableColumns.java
AlterTableQuery.java
BaseCaseStatement.java
BaseCreateQuery.java
BaseGrantQuery.java
BaseInsertQuery.java
BinaryCondition.java
BooleanValueObject.java
CaseStatement.java
ColumnObject.java
ComboCondition.java
ComboExpression.java
Comment.java
Condition.java
ConstraintClause.java
ConstraintObject.java
Converter.java
CreateIndexQuery.java
CreateTableQuery.java
CreateViewQuery.java
CustomCondition.java
CustomExpression.java
CustomSql.java
DeleteQuery.java
DropQuery.java
ExceptQuery.java
Expression.java
ForeignKeyConstraintClause.java
FunctionCall.java
FunctionObject.java
GrantQuery.java
InCondition.java
IndexObject.java
InsertQuery.java
InsertSelectQuery.java
IntersectQuery.java
JdbcEscape.java
JdbcScalarFunction.java
NegateExpression.java
NestableClause.java
NotCondition.java
NumberValueObject.java
OrderObject.java
Query.java
QueryPreparer.java
QueryReader.java
RevokeQuery.java
SelectQuery.java
SetOperationQuery.java
SimpleCaseStatement.java
SqlContext.java
SqlObject.java
SqlObjectList.java
Subquery.java
TableDefObject.java
TableObject.java
TypedColumnObject.java
UnaryCondition.java
UnionQuery.java
UpdateQuery.java
ValidationContext.java
ValidationException.java
ValueObject.java
Verifiable.java
dbspec
Column.java
Constraint.java
ForeignKeyConstraint.java
Function.java
Index.java
Join.java
RejoinTable.java
Table.java
basic
DbColumn.java
DbConstraint.java
DbForeignKeyConstraint.java
DbFunction.java
DbFunctionPackage.java
DbIndex.java
DbJoin.java
DbObject.java
DbSchema.java
DbSpec.java
DbTable.java
org
ut
biolab
medsavant
shared
appapi
MedSavantApp.java
MedSavantDashboardApp.java
MedSavantGeneInspectorApp.java
MedSavantVariantInspectorApp.java
MedSavantVariantSectionApp.java
appdevapi
AppColors.java
DBAnnotationColumns.java
Variant.java
VariantIterator.java
db
ColumnDef.java
ColumnType.java
FatalDatabaseException.java
MedSavantDatabaseExtras.java
Settings.java
TableSchema.java
format
AnnotationFormat.java
BasicPatientColumns.java
BasicVariantColumns.java
CustomField.java
UserRole.java
importing
BEDFormat.java
FileFormat.java
ImportDelimitedFile.java
model
Annotation.java
AnnotationDownloadInformation.java
AnnotationLog.java
Block.java
Chromosome.java
Cohort.java
Gene.java
GeneSet.java
GeneralLog.java
GenomicRegion.java
MedSavantServerJobProgress.java
Notification.java
Ontology.java
OntologyTerm.java
OntologyType.java
ProgressStatus.java
ProjectDetails.java
Range.java
RangeCondition.java
Reference.java
RegionSet.java
ScatterChartEntry.java
ScatterChartMap.java
SessionExpiredException.java
SimplePatient.java
SimpleVariantFile.java
UserComment.java
UserCommentGroup.java
UserLevel.java
VariantComment.java
VariantTag.java
exception
LockException.java
UnauthorizedException.java
serverapi
AnnotationManagerAdapter.java
CohortManagerAdapter.java
CustomTablesAdapter.java
DBUtilsAdapter.java
GeneSetManagerAdapter.java
LogManagerAdapter.java
MedSavantServerRegistry.java
NetworkManagerAdapter.java
NotificationManagerAdapter.java
OntologyManagerAdapter.java
PatientManagerAdapter.java
ProjectManagerAdapter.java
ReferenceManagerAdapter.java
RegionSetManagerAdapter.java
SessionManagerAdapter.java
SettingsManagerAdapter.java
SetupAdapter.java
UserManagerAdapter.java
VariantManagerAdapter.java
util
AnnotationUtils.java
BinaryConditionMS.java
ChromosomeComparator.java
ClientPermission.java
ClientType.java
DeepCopy.java
DirectorySettings.java
ExtensionFileFilter.java
ExtensionsFileFilter.java
FastByteArrayInputStream.java
FastByteArrayOutputStream.java
IOUtils.java
MiscUtils.java
ModificationType.java
Modifier.java
NetworkUtils.java
RemoteFileCache.java
SQLUtils.java
SeekableFTPStream.java
ServerRequest.java
VersionSettings.java
WebResources.java
vcf
VariantRecord.java
custom-libs
medsavant-app-comm
src
main
java
edu
toronto
cs
medsavant
medsavant
app
api
appcomm
AppComm.java
AppCommHandler.java
AppCommRegistry.java
BAMFileComm.java
PatientVariantAnalyzeComm.java
VariantResultComm.java
test
java
edu
toronto
cs
medsavant
medsavant
app
api
AppTest.java
medsavant-component-fields
src
main
java
org
ut
biolab
medsavant
component
field
editable
App.java
EditableField.java
EditableFieldValidator.java
EnumEditableField.java
FieldCommittedListener.java
FieldEditedListener.java
IntegerEditableField.java
MouseResponsiveJLabel.java
OnClickEditableField.java
PasswordEditableField.java
StringEditableField.java
validator
EmailValidator.java
HostnameValidator.java
NonEmptyStringValidator.java
PositiveNumberValidator.java
URLValidator.java
test
java
edu
toronto
cs
medsavant
medsavant
component
fields
AppTest.java
mfiume-component-transition
src
main
java
mfiume
component
transition
Animator.java
App.java
JTransitionPanel.java
accessor
FloatAccessor.java
PointAccessor.java
painter
AlphaBasedPainterPanel.java
PaintUtils.java
PanelPainter.java
PositionBasedPainterPanel.java
test
java
mfiume
tween
AppTest.java
design
DNAnexus
src
dnanexus
DNAnexus.java
DXHelloWorld.java
DXTrimReads.java
jannovar
src
main
java
jannovar
Jannovar.java
annotation
AnnotatedVariantFactory.java
Annotation.java
AnnotationList.java
BlockSubstitution.java
DeletionAnnotation.java
DuplicationAnnotation.java
InsertionAnnotation.java
IntergenicAnnotation.java
IntronicAnnotation.java
NoncodingAnnotation.java
SingleNucleotideSubstitution.java
SpliceAnnotation.java
UTRAnnotation.java
common
ChromosomeMap.java
Constants.java
Disease.java
FeatureType.java
FilterType.java
Genotype.java
ModeOfInheritance.java
VariantType.java
exception
AnnotationException.java
ChromosomeScaffoldException.java
FeatureFormatException.java
FileDownloadException.java
IntervalTreeException.java
InvalidAttributException.java
JannovarException.java
KGParseException.java
PedParseException.java
VCFParseException.java
exome
Variant.java
VariantTypeCounter.java
genotype
GenotypeCall.java
GenotypeFactoryA.java
MultipleGenotypeFactory.java
SingleGenotypeFactory.java
gff
Feature.java
RNA2GeneIDMapper.java
TranscriptModelBuilder.java
interval
Interval.java
IntervalTree.java
LeftComparator.java
Node.java
RightComparator.java
io
EnsemblFastaParser.java
FastaParser.java
GFFparser.java
PedFileParser.java
RefSeqFastaParser.java
RefSeqParser.java
SerializationManager.java
TranscriptDataDownloader.java
TranscriptDataParser.java
UCSCDownloader.java
UCSCKGParser.java
VCFLine.java
VCFReader.java
pedigree
Pedigree.java
Person.java
reference
Chromosome.java
TranscriptModel.java
Translator.java
test
java
jannovar
annotation
BlockSubAnnotationTest.java
DeletionAnnotationTest.java
DownstreamAnnotationTest.java
DuplicationAnnotationTest.java
InsertionAnnotationTest.java
IntergenicAnnotationTest.java
IntronicAnnotationTest.java
NoncodingRNAAnnotationTest.java
NonsynonymousAnnotationTest.java
SpliceAnnotationTest.java
StopAnnotationTest.java
SynonymousAnnotationTest.java
UTR3AnnotationTest.java
UTR5AnnotationTest.java
UpstreamAnnotationTest.java
common
VariantTypeTest.java
exome
VariantTest.java
genotype
GenotypeCallTest.java
gff
RNA2GeneIDMapperTest.java
interval
IntervalTest.java
IntervalTreeTest.java
NodeTest.java
io
GFFparserTest.java
MultiSampleVCFReaderTest.java
VCFLineTest.java
VCFReaderTest.java
pedigree
PedigreeADTest.java
PedigreeARTest.java
reference
TranscriptModelTest.java
medsavant.haplotype
src
medsavant
haplotype
BEAGLEWrapper.java
Haplotype.java
utilities
Mailer
src
main
java
com
medsavant
mailer
Mail.java
test
java
com
medsavant
mailer
AppTest.java
MakePosterBG
src
makeposterbg
ArcSegment.java
MakePosterBG.java
Ring.java
RingChart.java
annotation-formatter
src
main
java
org
broad
tabix
TabixReader.java
TabixWriter.java
ut
biolab
medsavant
shared
util
IOUtils.java
medsavant
annotation
format
AnnotationFormatter.java
AnnotationWriter.java
MedSavantAnnotationFormatter.java
testWebBrowser
src
testwebbrowser
TestWebBrowser.java
package pedviz.view; /** * * @author mfiume */ public class Symbol2D { }